Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq6412 187 8e-42 seq2116 105 2e-17 seq4403 95.1 4e-14 seq4915 86.0 2e-11 seq3205 84.2 7e-11 >seq6412 Length=17604 Score = 187 bits (206), Expect = 8e-42 Identities = 183/236 (78%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | || || ||||| | |||||||||||| || ||||||| Sbjct 16708 TTTGCATCCCACCACGGAGACGAAGGACGAGATGCAAAGTAGACTCTTTCTGGATATTAT 16767 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || || |||||||| ||||||||||| | |||||||| | Sbjct 16768 AATCAGACAGCGTCCGGCCGTCCTCCAGTTGTTTCCCAGCAAAGATCAACCGTTGCTGGT 16827 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || |||||||| || || | ||| |||||||| |||| ||| |||| Sbjct 16828 CGGGGGGGATGCCCTCCTTATCCTGGATCTTTGATTTGACATTATCGATCGTATCTGATG 16887 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||||||| || |||| ||||| || ||||| || || || ||||| |||||| Sbjct 16888 ACTCAACTTCTAGCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCATT 16943 Score = 167 bits (184), Expect = 7e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || ||||| | ||| || |||||||| ||||||||||||||| Sbjct 16488 CCACCACGGAGACGAAGGACGAGATGCAAAGTCGATTCTTTTTGGATATTATAATCAGAT 16547 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || |||| |||||||| ||||| || ||||| ||||| | |||||||| || || || Sbjct 16548 AACGTTCTGCCATCTTCTAGTTGCTTCCCAGCGAAGATCAACCGTTGCTGGTCGGGGGGG 16607 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || ||||| || ||||| | || |||||||| |||| || || | || ||| Sbjct 16608 ATACCCTCCTTATCTTGGATTTTTGACTTGACATTATCGATCGTGTCTGACGACTCGACT 16667 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || |||| ||||| || ||||| || || || ||||| ||||| Sbjct 16668 TCTAGCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCAT 16714 Score = 127 bits (140), Expect = 6e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || ||||| | | || || ||||| | ||| ||||| || || || || | Sbjct 16936 TTTGCATTCCGCCACGGAGACGGAGGACGAGATGCAAAGTGGACTCCTTCTGTATGTTGT 16995 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||||||||| || || ||||| || ||||| || |||||||| || | || || || | Sbjct 16996 AATCAGATAACGTCCGGCCATCCTCCAGTTGCTTGCCAGCAAATATCAACCGCTGTTGGT 17055 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || || |||||||| |||||||| || |||||||||| || | Sbjct 17056 CAGGGGGGATGCCCTCCTTGTCCTGAATCTTAGCTTTAACGTTATCAATCGTGTCGCTCG 17115 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTA 140715 || || || || || | |||||||| |||| Sbjct 17116 ACTCGACCTCTAGGGTGATGGTCTTTCCCGTTA 17148 >seq2116 Length=14111 Score = 105 bits (116), Expect = 2e-17 Identities = 244/363 (67%), Gaps = 5/363 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATTT 349590 || || ||||| || | |||||| | | || |||||||| || || || ||| || | Sbjct 1605 CCGGAGGAAATCTCGGCCATGGTTCTTGGGAAGATGAAGGAGATCGCCGAGAGC-TACCT 1663 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 || | ||||| || | ||||| | ||||| || || || || |||||||||||| | Sbjct 1664 TGGAAAGACAGTCACCCACGCTGTCGTCACTGTTCCCGCATACTTCAATGATGCCCAGAG 1723 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 || || || ||||| || | ||||| || | | || || | | | ||||| Sbjct 1724 GCAGGCTACCAAGGATGCCGGTACTATTGCCGGTCTTACCGTCCTCCGTGTCGTCAATGA 1783 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTAT 349770 ||| || || ||||| || || || || | || || | |||| | | |||| Sbjct 1784 ACCTACCGCCGCAGCTATCGCTTACGGTTTGGACAAGACCGGTGATGA-GCGCCAAATCG 1842 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 || | | | ||| | |||||||||||||| ||||| || || || | |||| | || Sbjct 1843 TCGTGTAT--GATCTCGGTGGTGGTACTTTCGATGTCTCCCTCCTGTCCATTGACAATGG 1900 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 | ||||| || || || || ||||| || ||||| ||||| ||||||||||| | Sbjct 1901 TGTCTTTGAGGTCCTGGCTACCGCCGGTGACACTCATCTCGGTGGTGAAGATTTTGACCA 1960 Query 349891 TCG 349893 ||| Sbjct 1961 TCG 1963 >seq4403 Length=14617 Score = 95.1 bits (104), Expect = 4e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||| || || | | ||| || || ||||||||||| || ||||| |||||||| || Sbjct 4950 ACCACCGCGCAAGCGCAAAACCAGGTGGAGAGTAGACTCCTTCTGAATGTTATAATCTGA 5009 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | ||| || ||||| || || || || || || || ||||| || || || || ||||| Sbjct 5010 GAGTGTCCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATTAGCCGCTGTTGGTCTGGAGG 5069 Query 140630 AATTCCTTCTTTATC 140644 ||||| || ||||| Sbjct 5070 GATTCCCTCCTTATC 5084 >seq4915 Length=40781 Score = 86.0 bits (94), Expect = 2e-11 Identities = 96/128 (75%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || ||||| | ||||| ||| ||||| | || ||||| |||||||||||||| Sbjct 11370 CGAGGAACACCGAGAGTAACGTTC---TTAGAAGAGACTCCAGCGAAGTGGAAAGTATTT 11426 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 | || | || |||| ||||| || || ||||| ||||| | |||||| ||||| ||| Sbjct 11427 AATGTCATCTGTGTAGCAGGCTCGCCGATCGACTGGGCTGCCAGAACGCCGACCATCTCT 11486 Query 377578 CCAGGATT 377585 || ||||| Sbjct 11487 CCTGGATT 11494 >seq3205 Length=38634 Score = 84.2 bits (92), Expect = 7e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || |||||||| || || | ||| || || || || ||||| ||||| || || ||| Sbjct 37386 TTCTGAATATTGTAGTCGTTCAGTGTCCGACCGTCCTCGAGTTGCTTTCCGGCGAAAATT 37445 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | ||| || ||||| || ||||| || || ||||||||||| || | || ||||| || Sbjct 37446 AAACGCTGTTGATCGGGTGGAATCCCCTCCTTATCCTGAATCTTCGACTTCACATTGTCG 37505 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || | || | || || ||||| |||| ||||| || || || || || || || Sbjct 37506 ATTGTGTCGCTCGACTCTACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 37564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515086078912010