Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq6412 187 8e-42
seq2116 105 2e-17
seq4403 95.1 4e-14
seq4915 86.0 2e-11
seq3205 84.2 7e-11
>seq6412
Length=17604
Score = 187 bits (206), Expect = 8e-42
Identities = 183/236 (78%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| |||||||| | | || || ||||| | |||||||||||| || |||||||
Sbjct 16708 TTTGCATCCCACCACGGAGACGAAGGACGAGATGCAAAGTAGACTCTTTCTGGATATTAT 16767
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
||||||| | || || || || || |||||||| ||||||||||| | |||||||| |
Sbjct 16768 AATCAGACAGCGTCCGGCCGTCCTCCAGTTGTTTCCCAGCAAAGATCAACCGTTGCTGGT 16827
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || |||||||| || || | ||| |||||||| |||| ||| ||||
Sbjct 16828 CGGGGGGGATGCCCTCCTTATCCTGGATCTTTGATTTGACATTATCGATCGTATCTGATG 16887
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
|||||||| || |||| ||||| || ||||| || || || ||||| ||||||
Sbjct 16888 ACTCAACTTCTAGCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCATT 16943
Score = 167 bits (184), Expect = 7e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|||||||| | | || || ||||| | ||| || |||||||| |||||||||||||||
Sbjct 16488 CCACCACGGAGACGAAGGACGAGATGCAAAGTCGATTCTTTTTGGATATTATAATCAGAT 16547
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
|| |||| |||||||| ||||| || ||||| ||||| | |||||||| || || ||
Sbjct 16548 AACGTTCTGCCATCTTCTAGTTGCTTCCCAGCGAAGATCAACCGTTGCTGGTCGGGGGGG 16607
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
|| || || ||||| || ||||| | || |||||||| |||| || || | || |||
Sbjct 16608 ATACCCTCCTTATCTTGGATTTTTGACTTGACATTATCGATCGTGTCTGACGACTCGACT 16667
Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || |||| ||||| || ||||| || || || ||||| |||||
Sbjct 16668 TCTAGCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCAT 16714
Score = 127 bits (140), Expect = 6e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| || ||||| | | || || ||||| | ||| ||||| || || || || |
Sbjct 16936 TTTGCATTCCGCCACGGAGACGGAGGACGAGATGCAAAGTGGACTCCTTCTGTATGTTGT 16995
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||||||||| || || ||||| || ||||| || |||||||| || | || || || |
Sbjct 16996 AATCAGATAACGTCCGGCCATCCTCCAGTTGCTTGCCAGCAAATATCAACCGCTGTTGGT 17055
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||| || || || || || |||||||| |||||||| || |||||||||| || |
Sbjct 17056 CAGGGGGGATGCCCTCCTTGTCCTGAATCTTAGCTTTAACGTTATCAATCGTGTCGCTCG 17115
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTA 140715
|| || || || || | |||||||| ||||
Sbjct 17116 ACTCGACCTCTAGGGTGATGGTCTTTCCCGTTA 17148
>seq2116
Length=14111
Score = 105 bits (116), Expect = 2e-17
Identities = 244/363 (67%), Gaps = 5/363 (1%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATTT 349590
|| || ||||| || | |||||| | | || |||||||| || || || ||| || |
Sbjct 1605 CCGGAGGAAATCTCGGCCATGGTTCTTGGGAAGATGAAGGAGATCGCCGAGAGC-TACCT 1663
Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650
|| | ||||| || | ||||| | ||||| || || || || |||||||||||| |
Sbjct 1664 TGGAAAGACAGTCACCCACGCTGTCGTCACTGTTCCCGCATACTTCAATGATGCCCAGAG 1723
Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710
|| || || ||||| || | ||||| || | | || || | | | |||||
Sbjct 1724 GCAGGCTACCAAGGATGCCGGTACTATTGCCGGTCTTACCGTCCTCCGTGTCGTCAATGA 1783
Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTAT 349770
||| || || ||||| || || || || | || || | |||| | | ||||
Sbjct 1784 ACCTACCGCCGCAGCTATCGCTTACGGTTTGGACAAGACCGGTGATGA-GCGCCAAATCG 1842
Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830
|| | | | ||| | |||||||||||||| ||||| || || || | |||| | ||
Sbjct 1843 TCGTGTAT--GATCTCGGTGGTGGTACTTTCGATGTCTCCCTCCTGTCCATTGACAATGG 1900
Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890
| ||||| || || || || ||||| || ||||| ||||| ||||||||||| |
Sbjct 1901 TGTCTTTGAGGTCCTGGCTACCGCCGGTGACACTCATCTCGGTGGTGAAGATTTTGACCA 1960
Query 349891 TCG 349893
|||
Sbjct 1961 TCG 1963
>seq4403
Length=14617
Score = 95.1 bits (104), Expect = 4e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
|||||| || || | | ||| || || ||||||||||| || ||||| |||||||| ||
Sbjct 4950 ACCACCGCGCAAGCGCAAAACCAGGTGGAGAGTAGACTCCTTCTGAATGTTATAATCTGA 5009
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| ||| || ||||| || || || || || || || ||||| || || || || |||||
Sbjct 5010 GAGTGTCCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATTAGCCGCTGTTGGTCTGGAGG 5069
Query 140630 AATTCCTTCTTTATC 140644
||||| || |||||
Sbjct 5070 GATTCCCTCCTTATC 5084
>seq4915
Length=40781
Score = 86.0 bits (94), Expect = 2e-11
Identities = 96/128 (75%), Gaps = 3/128 (2%)
Strand=Plus/Plus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| || ||||| | ||||| ||| ||||| | || ||||| ||||||||||||||
Sbjct 11370 CGAGGAACACCGAGAGTAACGTTC---TTAGAAGAGACTCCAGCGAAGTGGAAAGTATTT 11426
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
| || | || |||| ||||| || || ||||| ||||| | |||||| ||||| |||
Sbjct 11427 AATGTCATCTGTGTAGCAGGCTCGCCGATCGACTGGGCTGCCAGAACGCCGACCATCTCT 11486
Query 377578 CCAGGATT 377585
|| |||||
Sbjct 11487 CCTGGATT 11494
>seq3205
Length=38634
Score = 84.2 bits (92), Expect = 7e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| |||||||| || || | ||| || || || || ||||| ||||| || || |||
Sbjct 37386 TTCTGAATATTGTAGTCGTTCAGTGTCCGACCGTCCTCGAGTTGCTTTCCGGCGAAAATT 37445
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
| ||| || ||||| || ||||| || || ||||||||||| || | || ||||| ||
Sbjct 37446 AAACGCTGTTGATCGGGTGGAATCCCCTCCTTATCCTGAATCTTCGACTTCACATTGTCG 37505
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728
|| | || | || || ||||| |||| ||||| || || || || || || ||
Sbjct 37506 ATTGTGTCGCTCGACTCTACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 37564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515086078912010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |