Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq3205 136 5e-27
seq6412 129 7e-25
seq4403 111 2e-19
seq4098 93.3 5e-14
>seq3205
Length=38634
Score = 136 bits (150), Expect = 5e-27
Identities = 141/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| || || || ||||| ||||| |||||||| ||||| | || | ||
Sbjct 37565 CTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTAGAGTCGAGCGACACAAT 37506
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| ||||| | || |||||||| |||||||| ||||| || || || |||||| |
Sbjct 37505 CGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGGATTCCACCCGATCAACAGCGTTT 37446
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|||||| || || |||||||||||||| | ||| || || ||||| ||| | || ||
Sbjct 37445 AATTTTCGCCGGAAAGCAACTCGAGGACGGTCGGACACTGAACGACTACAATATTCAGAA 37386
Query 27594 GGAAT 27598
|| ||
Sbjct 37385 GGTAT 37381
>seq6412
Length=17604
Score = 129 bits (142), Expect = 7e-25
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| || ||||| || || || ||||| ||||| | || | |||| || | || |||
Sbjct 17146 ACGGGAAAGACCATCACCCTAGAGGTCGAGTCGAGCGACACGATTGATAACGTTAAAGCT 17087
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||||||||||||||| || || || ||||| ||||| | || |||||||| |||
Sbjct 17086 AAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGGTTGATATTTGCTGGCAAG 17027
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||| ||||||| || || || | || || || | || ||||| |||||| | |||
Sbjct 17026 CAACTGGAGGATGGCCGGACGTTATCTGATTACAACATACAGAAGGAGTCCACTTTGCAT 16967
Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633
|| ||| | ||||| || || |||
Sbjct 16966 CTCGTCCTCCGTCTCCGTGGCGGA 16943
>seq4403
Length=14617
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
|| ||||||||||| ||||||||||| ||||| |||||||| || || ||||| || |||
Sbjct 5084 GATAAGGAGGGAATCCCTCCAGACCAACAGCGGCTAATTTTCGCCGGCAAGCAGCTGGAG 5025
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|||| || || || |||| ||||| | || ||||| || ||||| || || || |||
Sbjct 5024 GATGGCCGGACACTCTCAGATTATAACATTCAGAAGGAGTCTACTCTCCACCTGGTTTTG 4965
Query 27619 CGTCTTCGCGGTGG 27632
|| | ||||||||
Sbjct 4964 CGCTTGCGCGGTGG 4951
>seq4098
Length=8252
Score = 93.3 bits (102), Expect = 5e-14
Identities = 193/286 (67%), Gaps = 10/286 (3%)
Strand=Plus/Plus
Query 31255 TGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGT 31314
||||| || ||| | || || ||||||||||| | | ||||| ||||| |
Sbjct 3120 TGCACCCTCATTCTCACGGAAGGTGACTCGGCCCTTGGTTTAGCTATGGCTGGAAGGGCG 3179
Query 31315 GTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGT 31374
||||| |||| | ||| || |||||||| ||||||||||| | | |||||||||
Sbjct 3180 GTTGTTGGGCCTGACTTGTTTGGCGTGTTTCCTCTCCGAGGCAAACTTCTGAACGTTCGT 3239
Query 31375 GACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTC 31434
|| ||||| || | ||| || || | |||| ||| || || | ||||| | |
Sbjct 3240 GATGCCTCAATTGATCAGATTTCGAAGAATGCGGAGATTCAAAATATCAAAAACTTTTTT 3299
Query 31435 GGGCTTCAGCATGGCAAGGTATATAATTCACTGA-----GAGAATTGCGGTACGGTCGCC 31489
|| |||||||| |||| | | ||| || ||| | | | |||||||| | |
Sbjct 3300 GGCCTTCAGCA---CAAG--AAAGAATACAGTGACACTCGTGGCCTACGGTACGGCCATC 3354
Query 31490 TCATGATTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGG 31535
| ||||||||||| || |||| ||| || || |||||||| ||
Sbjct 3355 TTATGATTATGACTGATCAGGATCACGATGGGAGCCACATCAAAGG 3400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570248592610400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |