Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3205 136 5e-27 seq6412 129 7e-25 seq4403 111 2e-19 seq4098 93.3 5e-14 >seq3205 Length=38634 Score = 136 bits (150), Expect = 5e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || || ||||| ||||| |||||||| ||||| | || | || Sbjct 37565 CTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTAGAGTCGAGCGACACAAT 37506 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| ||||| | || |||||||| |||||||| ||||| || || || |||||| | Sbjct 37505 CGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGGATTCCACCCGATCAACAGCGTTT 37446 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 |||||| || || |||||||||||||| | ||| || || ||||| ||| | || || Sbjct 37445 AATTTTCGCCGGAAAGCAACTCGAGGACGGTCGGACACTGAACGACTACAATATTCAGAA 37386 Query 27594 GGAAT 27598 || || Sbjct 37385 GGTAT 37381 >seq6412 Length=17604 Score = 129 bits (142), Expect = 7e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || || ||||| ||||| | || | |||| || | || ||| Sbjct 17146 ACGGGAAAGACCATCACCCTAGAGGTCGAGTCGAGCGACACGATTGATAACGTTAAAGCT 17087 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| || || || ||||| ||||| | || |||||||| ||| Sbjct 17086 AAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGGTTGATATTTGCTGGCAAG 17027 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||||| || || || | || || || | || ||||| |||||| | ||| Sbjct 17026 CAACTGGAGGATGGCCGGACGTTATCTGATTACAACATACAGAAGGAGTCCACTTTGCAT 16967 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||| | ||||| || || ||| Sbjct 16966 CTCGTCCTCCGTCTCCGTGGCGGA 16943 >seq4403 Length=14617 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 || ||||||||||| ||||||||||| ||||| |||||||| || || ||||| || ||| Sbjct 5084 GATAAGGAGGGAATCCCTCCAGACCAACAGCGGCTAATTTTCGCCGGCAAGCAGCTGGAG 5025 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || || |||| ||||| | || ||||| || ||||| || || || ||| Sbjct 5024 GATGGCCGGACACTCTCAGATTATAACATTCAGAAGGAGTCTACTCTCCACCTGGTTTTG 4965 Query 27619 CGTCTTCGCGGTGG 27632 || | |||||||| Sbjct 4964 CGCTTGCGCGGTGG 4951 >seq4098 Length=8252 Score = 93.3 bits (102), Expect = 5e-14 Identities = 193/286 (67%), Gaps = 10/286 (3%) Strand=Plus/Plus Query 31255 TGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGT 31314 ||||| || ||| | || || ||||||||||| | | ||||| ||||| | Sbjct 3120 TGCACCCTCATTCTCACGGAAGGTGACTCGGCCCTTGGTTTAGCTATGGCTGGAAGGGCG 3179 Query 31315 GTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGT 31374 ||||| |||| | ||| || |||||||| ||||||||||| | | ||||||||| Sbjct 3180 GTTGTTGGGCCTGACTTGTTTGGCGTGTTTCCTCTCCGAGGCAAACTTCTGAACGTTCGT 3239 Query 31375 GACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTC 31434 || ||||| || | ||| || || | |||| ||| || || | ||||| | | Sbjct 3240 GATGCCTCAATTGATCAGATTTCGAAGAATGCGGAGATTCAAAATATCAAAAACTTTTTT 3299 Query 31435 GGGCTTCAGCATGGCAAGGTATATAATTCACTGA-----GAGAATTGCGGTACGGTCGCC 31489 || |||||||| |||| | | ||| || ||| | | | |||||||| | | Sbjct 3300 GGCCTTCAGCA---CAAG--AAAGAATACAGTGACACTCGTGGCCTACGGTACGGCCATC 3354 Query 31490 TCATGATTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGG 31535 | ||||||||||| || |||| ||| || || |||||||| || Sbjct 3355 TTATGATTATGACTGATCAGGATCACGATGGGAGCCACATCAAAGG 3400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570248592610400