Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4403 109 3e-19 seq6412 93.3 3e-14 >seq4403 Length=14617 Score = 109 bits (120), Expect = 3e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 ||||| |||| |||||||| |||||| ||||||||||||||||| ||||| || | Sbjct 4963 CGCAAAACCAGGTGGAGAGTAGACTCCTTCTGAATGTTATAATCTGAGAGTGTCCGGCCA 5022 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 || || || || || ||||| || |||| ||||||||||| || || | ||||||||| Sbjct 5023 TCCTCCAGCTGCTTGCCGGCGAAAATTAGCCGCTGTTGGTCTGGAGGGATTCCCTCCTTA 5082 Query 34612 TCTGT 34616 ||||| Sbjct 5083 TCTGT 5087 >seq6412 Length=17604 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | ||| | |||| |||||| || ||||| ||||| || Sbjct 16944 CCGCCACGGAGACGGAGGACGAGATGCAAAGTGGACTCCTTCTGTATGTTGTAATCAGAT 17003 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || ||||| || || |||||||| || ||||||||||| || || Sbjct 17004 AACGTCCGGCCATCCTCCAGTTGCTTGCCAGCAAATATCAACCGCTGTTGGTCAGGGGGG 17063 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| ||| || | ||||||| || ||| ||||| ||| ||| | Sbjct 17064 ATGCCCTCCTTGTC-CTGAATCTTAGCTTTAACGTTATCAATCGTGTCGCTCG-ACTCGA 17121 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTA 34684 | || | ||| || || || || |||| Sbjct 17122 CCTCTAGGGTGATGGTCTTTCCCGTTA 17148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314696343900110