Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq6412 132 1e-25
seq4403 105 2e-17
>seq6412
Length=17604
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || | ||| |||||||| ||||| |||||||| | || |||| || ||
Sbjct 16731 AGGACGAGATGCAAAGTAGACTCTTTCTGGATATTATAATCAGACAGCGTCCGGCCGTCC 16790
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||| || || || || ||||| | ||||| ||||| || || | || ||||| |||
Sbjct 16791 TCCAGTTGTTTCCCAGCAAAGATCAACCGTTGCTGGTCGGGGGGGATGCCCTCCTTATCC 16850
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||||||| ||| || || ||||| || || || ||||| || || || ||||||
Sbjct 16851 TGGATCTTTGATTTGACATTATCGATCGTATCTGATGACTCAACTTCTAGCGTAATCGTC 16910
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || || || ||||| || || | ||||||
Sbjct 16911 TTCCCAGTTAGGGTCTTGACGAAAATTTGCATT 16943
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || | ||| || ||||||||||| |||||||| | | || || ||||||
Sbjct 16503 AGGACGAGATGCAAAGTCGATTCTTTTTGGATATTATAATCAGATAACGTTCTGCCATCT 16562
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || |||||||| | ||||| ||||| || || | || ||||| ||
Sbjct 16563 TCTAGTTGCTTCCCAGCGAAGATCAACCGTTGCTGGTCGGGGGGGATACCCTCCTTATCT 16622
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| ||| || || || ||||| ||||| || || || || || || ||||||
Sbjct 16623 TGGATTTTTGACTTGACATTATCGATCGTGTCTGACGACTCGACTTCTAGCGTAATCGTC 16682
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | |||||
Sbjct 16683 TTCCCAGTTAGGGTCTTGACGAAAATTTGCAT 16714
Score = 125 bits (138), Expect = 2e-23
Identities = 143/191 (75%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || | ||||||||| || || ||||| ||||| | | |||| |||||
Sbjct 16959 AGGACGAGATGCAAAGTGGACTCCTTCTGTATGTTGTAATCAGATAACGTCCGGCCATCC 17018
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||| |||||||| || || || | || ||||||||||| || | || |||||||||
Sbjct 17019 TCCAGTTGCTTGCCAGCAAATATCAACCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCC 17078
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079
|| ||||| ||| ||||| || || ||||| ||| || ||||| || |||||
Sbjct 17079 TGAATCTTAGCTTTAACGTTATCAATCGTGTC---GCTCGACTCGACCTCTAGGGTGATG 17135
Query 211080 GTCTTTCCCGT 211090
|||||||||||
Sbjct 17136 GTCTTTCCCGT 17146
>seq4403
Length=14617
Score = 105 bits (116), Expect = 2e-17
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
|| ||||| ||||| ||||| || || ||||||||||| | || |||| ||||| |||
Sbjct 4969 ACCAGGTGGAGAGTAGACTCCTTCTGAATGTTATAATCTGAGAGTGTCCGGCCATCCTCC 5028
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
||||||||||| ||||| || || || |||||||| ||||| | ||| ||||| ||
Sbjct 5029 AGCTGCTTGCCGGCGAAAATTAGCCGCTGTTGGTCTGGAGGGATTCCCTCCTTATC 5084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159023236324550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |