Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq6412 107 1e-18
>seq6412
Length=17604
Score = 107 bits (118), Expect = 1e-18
Identities = 134/181 (74%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693
|||||||| || ||||| || || || || || | ||||| |||| || ||||| |
Sbjct 17146 ACGGGAAAGACCATCACCCTAGAGGTCGAGTCGAGCGACACGATTGATAACGTTAAAGCT 17087
Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753
|| | || ||||| || || | || || || |||||||| || |||||||| |||||
Sbjct 17086 AAGA-TTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGGTTGATATTTGCTGGCAA 17028
Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813
|||||||| || | || || ||| |||||||||||||| || |||||||| || ||
Sbjct 17027 GCAACTGGAGGATGGCCGGACGTTATCTGATTACAACATACAGAAGGAGTCCACTTTGCA 16968
Query 23814 T 23814
|
Sbjct 16967 T 16967
Score = 89.7 bits (98), Expect = 3e-13
Identities = 145/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| |||||||| || ||||| || || || ||||| || || |||||||| || |
Sbjct 16943 AATGCAAATTTTCGTCAAGACCCTAACTGGGAAGACGATTACGCTAGAAGTTGAGTCATC 16884
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| || | || ||| | ||| |||| | | || || || || | || || || |
Sbjct 16883 AGATACGATCGATAATGTCAAATCAAAGA-TCCAGGATAAGGAGGGCATCCCCCCCGACC 16825
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| || || || || ||||| || ||||||||||| |||| || || | ||||| |
Sbjct 16824 AGCAACGGTTGATCTTTGCTGGGAAACAACTGGAGGACGGCCGGACGCTGTCTGATTATA 16765
Query 23789 ACATACAAAAAGAGTCCACATTACAT 23814
| || || |||||||| || || |||
Sbjct 16764 ATATCCAGAAAGAGTCTACTTTGCAT 16739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337973884004360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |