Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq6412 179 8e-40 seq3205 98.7 2e-15 >seq6412 Length=17604 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || ||||| || || |||||||||||| || || |||| Sbjct 16488 CCACCACGGAGACGAAGGACGAGATGCAAAGTCGATTCTTTTTGGATATTATAATCAGAT 16547 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| | |||||| |||||||| ||||| || |||||||| ||||| ||||| || Sbjct 16548 AACGTTCTGCCATCTTCTAGTTGCTTCCCAGCGAAGATCAACCGTTGCTGGTCGGGGGGG 16607 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| |||||||| |||| || || ||||||| ||||| || | |||||| Sbjct 16608 ATACCCTCCTTATCTTGGATTTTTGACTTGACATTATCGATCGTGTCTGACGACTCGACT 16667 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || |||||||| || || | ||||| ||||| || ||||| Sbjct 16668 TCTAGCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCAT 16714 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || ||||| || || ||||| ||||| || || |||| Sbjct 16716 CCACCACGGAGACGAAGGACGAGATGCAAAGTAGACTCTTTCTGGATATTATAATCAGAC 16775 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||| ||||| ||||||||||| ||||||||||| ||||| ||||| || Sbjct 16776 AGCGTCCGGCCGTCCTCCAGTTGTTTCCCAGCAAAGATCAACCGTTGCTGGTCGGGGGGG 16835 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || |||||||||| ||| || ||||||| || || || | || ||| Sbjct 16836 ATGCCCTCCTTATCCTGGATCTTTGATTTGACATTATCGATCGTATCTGATGACTCAACT 16895 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || |||||||| || || | ||||| ||||| || |||||| Sbjct 16896 TCTAGCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCATT 16943 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || || ||||| || ||| || || || |||||||| |||| Sbjct 16944 CCGCCACGGAGACGGAGGACGAGATGCAAAGTGGACTCCTTCTGTATGTTGTAATCAGAT 17003 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| ||||||||||| ||||| || || ||||| ||||| || ||||||||| || Sbjct 17004 AACGTCCGGCCATCCTCCAGTTGCTTGCCAGCAAATATCAACCGCTGTTGGTCAGGGGGG 17063 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| ||||| ||| |||| || ||||| | ||||| Sbjct 17064 ATGCCCTCCTTGTCCTGAATCTTAGCTTTAACGTTATCAATCGTGTCGCTCGACTCGACC 17123 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| ||||| ||||| Sbjct 17124 TCTAGGGTGATGGTCTTTCCCGT 17146 >seq3205 Length=38634 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || || |||||||| || || || || ||||| ||||| || ||||| || || Sbjct 37386 TTCTGAATATTGTAGTCGTTCAGTGTCCGACCGTCCTCGAGTTGCTTTCCGGCGAAAATT 37445 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 ||||| ||||| || ||||| |||||||| || || ||||| | || || | ||| Sbjct 37446 AAACGCTGTTGATCGGGTGGAATCCCCTCCTTATCCTGAATCTTCGACTTCACATTGTCG 37505 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| | || || || || || || ||||||||||||| ||||| ||||| Sbjct 37506 ATTGTGTCGCTCGACTCTACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 37564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046622923630180