Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6412 93.3 3e-14 >seq6412 Length=17604 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| || ||||| || ||||| | || || |||| ||||| || ||||| ||||| Sbjct 16751 CTCTTTCTGGATATTATAATCAGACAGCGTCCGGCCGTCCTCCAGTTGTTTCCCAGCAAA 16810 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| || ||||| || | || | || ||||| ||| ||||| || || | | Sbjct 16811 GATCAACCGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTT-TGATTTGACAT 16869 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | || || || | || || || || | |||||||||||| || || |||||||| | Sbjct 16870 TATCGATCGTATCTGATGACTCAACTTCTAGCGTAATCGTCTTCCCAGTTAGGGTCTTGA 16929 Query 44325 CGAAGATTTGCAT 44337 |||| |||||||| Sbjct 16930 CGAAAATTTGCAT 16942 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || || |||||||| || |||||||| || ||||| || | || | ||| ||||| Sbjct 16560 TCTTCTAGTTGCTTCCCAGCGAAGATCAACCGTTGCTGGTCGGGGGGGATACCCTCCTTA 16619 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 || || || ||| | | | || ||||| | || || || || | ||||||| Sbjct 16620 TCTTGGATTTTTGACTTGACATTATCGATCGTGTCTGACGACTCGACTTCTAGCGTAATC 16679 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || |||||||| ||||| |||||||| Sbjct 16680 GTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCAT 16714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359952361389390