Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6412 138 3e-27 seq4403 86.0 2e-11 >seq6412 Length=17604 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || ||||| || || || || || |||||| Sbjct 16711 CAAATTTTCGTCAAGACCCTAACTGGGAAGACGATTACGCTAGAAGTCGAGTCGTCAGAC 16652 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||| || || || || || || ||||| || ||||||||| Sbjct 16651 ACGATCGATAATGTCAAGTCAAAAATCCAAGATAAGGAGGGTATCCCCCCCGACCAGCAA 16592 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || || |||||||| || || | | |||||||| || Sbjct 16591 CGGTTGATCTTCGCTGGGAAGCAACTAGAAGATGGCAGAACGTTATCTGATTATAATATC 16532 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || ||||||| || Sbjct 16531 CAAAAAGAATCGACTTTGCATCTCGT 16506 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || ||||| || || || || || ||||| Sbjct 16939 CAAATTTTCGTCAAGACCCTAACTGGGAAGACGATTACGCTAGAAGTTGAGTCATCAGAT 16880 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| |||||| ||||| || || || ||||| || ||||||||| Sbjct 16879 ACGATCGATAATGTCAAATCAAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGCAA 16820 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || || || || |||| || | |||||||| || Sbjct 16819 CGGTTGATCTTTGCTGGGAAACAACTGGAGGACGGCCGGACGCTGTCTGATTATAATATC 16760 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || ||||||| || Sbjct 16759 CAGAAAGAGTCTACTTTGCATCTCGT 16734 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGTCAAA 178001 || ||||| || |||||||| ||||| || ||| ||||| || || ||||| ||| Sbjct 17146 ACGGGAAAGACCATCACCCTAGAGGTCGAGTCGAGC---GACACGATTGATAACGTTAAA 17090 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 |||||||||||||| || || ||||| || ||||| || || | || || || || Sbjct 17089 GCTAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGGTTGATATTTGCTGGC 17030 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || || || || ||||| |||| | | ||||| ||| | || || || || || || Sbjct 17029 AAGCAACTGGAGGATGGCCGGACGTTATCTGATTACAACATACAGAAGGAGTCCACTTTG 16970 Query 178122 CATCTTGT 178129 ||||| || Sbjct 16969 CATCTCGT 16962 >seq4403 Length=14617 Score = 86.0 bits (94), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 || || || ||||||||||| ||||| || || || || |||||||| || ||||| || Sbjct 5084 GATAAGGAGGGAATCCCTCCAGACCAACAGCGGCTAATTTTCGCCGGCAAGCAGCTGGAG 5025 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| |||| || | ||||||||| | || || || || || || || || |||||| Sbjct 5024 GATGGCCGGACACTCTCAGATTATAACATTCAGAAGGAGTCTACTCTCCACCTGGTTTTG 4965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203597484271980