Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq6412 122 8e-23
seq3205 109 5e-19
seq4403 98.7 9e-16
>seq6412
Length=17604
Score = 122 bits (134), Expect = 8e-23
Identities = 151/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | || ||||||| ||| ||||||||| ||||| || || ||
Sbjct 16944 CCGCCACGGAGACGGAGGACGAGATGCAAAGTGGACTCCTTCTGTATGTTGTAATCAGAT 17003
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || | || || || |||||||| || ||||||| ||||||||||| | |||
Sbjct 17004 AACGTCCGGCCATCCTCCAGTTGCTTGCCAGCAAATATCAACCGCTGTTGGTCAGGGGGG 17063
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| | || |||| |||| | | |||||||||||||| ||
Sbjct 17064 ATGCCCTCCTTGTCC-TGAATCTTAGCTTTAACGTTATCAATCGTGTCGCTCGACTCGAC 17122
Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838
||| | || || || || |||||
Sbjct 17123 CTCTAGGGTGATGGTCTTTCCCGT 17146
>seq3205
Length=38634
Score = 109 bits (120), Expect = 5e-19
Identities = 137/183 (75%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
|||||||||| || |||||| || || || |||| ||||| ||||| |||||||| |
Sbjct 37384 CCTTCTGAATATTGTAGTCGTTCAGTGTCCGACCGTCCTCGAGTTGCTTTCCGGCGAAAA 37443
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGAC 41791
| | |||||||| || | |||| | |||||| ||| ||| | || | ||||| |
Sbjct 37444 TTAAACGCTGTTGATCGGGTGGAATCCCCTCCTTATCC-TGAATCTTCGACTTCA-CATT 37501
Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
| | | |||||||||||||| ||||| | || || || ||||||||||| ||||| ||
Sbjct 37502 GTCGATTGTGTCGCTCGACTCTACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTGAC 37561
Query 41851 GAA 41853
|||
Sbjct 37562 GAA 37564
>seq4403
Length=14617
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| | || || ||||| || || || |||||||||||||||||| || |||
Sbjct 4951 CCACCGCGCAAGCGCAAAACCAGGTGGAGAGTAGACTCCTTCTGAATGTTATAATCTGAG 5010
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || ||||||||||||||||| || || ||||||||||| | ||
Sbjct 5011 AGTGTCCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATTAGCCGCTGTTGGTCTGGAGGG 5070
Query 41756 ACGCTCTCCTTGTC 41769
| | |||||| ||
Sbjct 5071 ATTCCCTCCTTATC 5084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462253897804000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |