Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6412 122 8e-23 seq3205 109 5e-19 seq4403 98.7 9e-16 >seq6412 Length=17604 Score = 122 bits (134), Expect = 8e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||||| ||| ||||||||| ||||| || || || Sbjct 16944 CCGCCACGGAGACGGAGGACGAGATGCAAAGTGGACTCCTTCTGTATGTTGTAATCAGAT 17003 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || || |||||||| || ||||||| ||||||||||| | ||| Sbjct 17004 AACGTCCGGCCATCCTCCAGTTGCTTGCCAGCAAATATCAACCGCTGTTGGTCAGGGGGG 17063 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || |||| |||| | | |||||||||||||| || Sbjct 17064 ATGCCCTCCTTGTCC-TGAATCTTAGCTTTAACGTTATCAATCGTGTCGCTCGACTCGAC 17122 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 ||| | || || || || ||||| Sbjct 17123 CTCTAGGGTGATGGTCTTTCCCGT 17146 >seq3205 Length=38634 Score = 109 bits (120), Expect = 5e-19 Identities = 137/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||||||||| || |||||| || || || |||| ||||| ||||| |||||||| | Sbjct 37384 CCTTCTGAATATTGTAGTCGTTCAGTGTCCGACCGTCCTCGAGTTGCTTTCCGGCGAAAA 37443 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGAC 41791 | | |||||||| || | |||| | |||||| ||| ||| | || | ||||| | Sbjct 37444 TTAAACGCTGTTGATCGGGTGGAATCCCCTCCTTATCC-TGAATCTTCGACTTCA-CATT 37501 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | |||||||||||||| ||||| | || || || ||||||||||| ||||| || Sbjct 37502 GTCGATTGTGTCGCTCGACTCTACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTGAC 37561 Query 41851 GAA 41853 ||| Sbjct 37562 GAA 37564 >seq4403 Length=14617 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| | || || ||||| || || || |||||||||||||||||| || ||| Sbjct 4951 CCACCGCGCAAGCGCAAAACCAGGTGGAGAGTAGACTCCTTCTGAATGTTATAATCTGAG 5010 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||||||||| || || ||||||||||| | || Sbjct 5011 AGTGTCCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATTAGCCGCTGTTGGTCTGGAGGG 5070 Query 41756 ACGCTCTCCTTGTC 41769 | | |||||| || Sbjct 5071 ATTCCCTCCTTATC 5084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462253897804000