Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emergomyces_20orientalis_20[genbank_20GCA_5F002110485.1_202017-04- 25] 108 sequences; 35,498,521 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq73 172 6e-38 seq103 116 4e-21 seq75 116 4e-21 seq49 98.7 1e-15 >seq73 Length=4627324 Score = 172 bits (190), Expect = 6e-38 Identities = 211/285 (74%), Gaps = 5/285 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||||||||| || ||||||||||||||||||| || || | || || Sbjct 220406 ATTTGGCAAATGTACAAAAAAGCAGAGGCGTCGTTCTGGACCGCAGAAGAAATTGATCTC 220465 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAG 116752 || || ||| ||||||| | | ||||| || ||||||| | |||||| Sbjct 220466 TCAAAAGACCTTCACGACTGGAACAACAGATTGAATGATGACGAGCGGTACTTCATCTCA 220525 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| |||| || |||||||| || |||||||||||||| || |||||||||||| Sbjct 220526 CACGTCTTGGCATTCTTCGCCGCGTCGGATGGCATCGTCAACGAAAACCTGGTCGAGCGT 220585 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | || || ||||| ||||||| || |||||||||||||| |||||| || Sbjct 220586 TTCAGCGGA-GAAGTTCAGGTTCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 220644 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||| || | ||||| || | || || |||||||||||| || Sbjct 220645 GGAAAATATTCACTCTGAGACCTACTCCCTCCTCATCGACACATA 220689 Score = 145 bits (160), Expect = 8e-30 Identities = 312/458 (68%), Gaps = 10/458 (2%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| || ||||| | || ||||||| | | ||| || |||| | |||| | Sbjct 220812 AGAAGGCTGATTGGGCTATCCGGTGGATCGAAGATAAGGAGTCCACCTTTGCACAGCGTC 220871 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || |||||||| |||||||| ||| ||||||| || ||||| | || || | Sbjct 220872 TCGTCGCCTTCGCTGCCGTCGAAGGCATCTTCTTCAGTGGATCCTTCGCTTCGATCTTCT 220931 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 || | |||||||| ||||||||||| ||||| || || |||||||| || || | | Sbjct 220932 GGTTGAAGAAACGGGGCCTCATGCCTGGCCTTACGTTTTCTAACGAGCTTATTTCTCGTG 220991 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||| | || || || |||||| | || ||| || ||| || || || | Sbjct 220992 ACGAGGGCTTACACACTGATTTCGCCTGTCTCCTCTTCTCTCACTTGCGTCACCGTCCCA 221051 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | ||| | |||| |||| || || ||| | ||||||||| ||||| Sbjct 221052 GCCAAGAGGCTGTCGAGAGGATCATCACTGAAGCTGTCACTATCGAGCAGGAGTTCCTTT 221111 Query 117282 CCGAAGCGCTGCCGGT-GCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 | || || || ||||| ||| || || ||| | || || || | |||| |||||||| Sbjct 221112 CAGATGCTCTCCCGGTCGCG-CTTCTTGGAATGAA-CGCCAAGCTCATGTGCCAATACAT 221169 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA---CTACAACAC 117396 ||||||||||| || | || || | ||| | ||| |||| | ||| ||| | Sbjct 221170 TGAGTTCGTCGCTGATCGCCTCCTCGT--TGCT-TTGGGCAACAAGAAAGTCTATAACTC 221226 Query 117397 GCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 ||||||| | ||||| ||| || ||||||| ||| Sbjct 221227 CACCAACCCATTTGACTTCATGGACAACATCTCCCTGG 221264 >seq103 Length=249856 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 40694 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 ||||| ||||| || || || |||||||| ||||||||| | || ||||| ||| ||| Sbjct 43384 AAATAGCTTCGTCAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAGTCCAGCGA 43325 Query 40752 CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 || | | | ||||| ||||| | ||||| ||||||||||| | |||||||| Sbjct 43324 CACTATCGACAATGTCAAGAGTAAAATCCAGGACAAGGAGGGCATCCCACCCGACCAGCA 43265 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 ||| | |||| ||| ||||| ||||| || |||| || || || | ||| || ||||| Sbjct 43264 GCGATTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACGCTTAGCGATTATAACAT 43205 Query 40872 CCAGAAGG-AGGC 40883 ||||||| |||| Sbjct 43204 TCAGAAGGTAGGC 43192 >seq75 Length=1151455 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || |||||||| || || | || |||||| | | Sbjct 639166 AATGCAGATCTTCGTTAAGACCCTGACCGGCAAAACGATTACTCTTGAAGTCGAAAGCTC 639107 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | |||| | || | |||| ||| || ||||| || ||||| | |||| Sbjct 639106 AGATACCATTGACAACGTTAAAAGCAAAA-TTCAAGATAAAGAAGGTATCCCACCAGACC 639048 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||||||||||| ||| || |||||||| || |||| || || ||| ||||||| Sbjct 639047 AGCAACGACTCATCTTCGCCGGAAAACAGCTTGAGGACGGCCGAACACTCTCAGACTACA 638988 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | ||||| || || |||| || || || || Sbjct 638987 ATATCCAAAAAGAATCCACACTCCACCTTGT 638957 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 ||||| ||||| | ||||| || || ||||| | ||||||||||| || |||| || Sbjct 639632 TCAAGTCCAAAATCCAGGACAAGGAAGGTATCCCTCCTGACCAGCAACGCCTTATCTTCG 639573 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| || ||||| |||| || ||||| ||||||||||||||||||||| | | Sbjct 639572 CTGGCAAGCAACTGGAAGACGGCCGTACCCTGTCAGACTACAACATCCAGAAGGAGTCTA 639513 Query 40886 CGCTGCA 40892 | || || Sbjct 639512 CCCTTCA 639506 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| ||||| ||||| ||||| || || ||| | || || ||| | | || | | | Sbjct 639383 TCGTCAAAACCCTCACTGGCAAGACTATTACCTTGGAGGTGGAATCTTCGGATACCATCG 639324 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| | ||| ||||| | || ||||| ||||||||| | ||||||||||| | Sbjct 639323 ACAACG-TAAAGAGCAAAATCCAGGATAAAGAAGGCATCCCCCCAGACCAGCAACGTTTG 639265 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || ||| | ||| || |||||||| || Sbjct 639264 ATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGTACCTTGTCCGATTATAACATCCAAAAA 639205 Query 40879 GAGGCCACGCTGCATCTAGT 40898 || |||| || ||||| || Sbjct 639204 GAATCCACCCTCCATCTTGT 639185 >seq49 Length=1984306 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||||||||| |||||| | ||||||||||| || |||| ||| ||||||||||| || Sbjct 95490 GACAAAGAGGGAATCCCCCCCGACCAGCAACGCCTGATCTTCGCCGGCAAACAGCTCGAG 95431 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | || ||||| |||||||||||| || || ||| | || || || || || || Sbjct 95430 GATGGCCGTACCCTTTCCGACTACAACATTCAAAAAGAGTCGACCCTTCACCTCGTCCTG 95371 Query 40903 CG 40904 || Sbjct 95370 CG 95369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218504454080