Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emergomyces_20orientalis_20[genbank_20GCA_5F002110485.1_202017-04- 25] 108 sequences; 35,498,521 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq79 244 9e-60 seq73 107 2e-18 seq103 98.7 9e-16 seq75 91.5 1e-13 >seq79 Length=405269 Score = 244 bits (270), Expect = 9e-60 Identities = 501/739 (68%), Gaps = 12/739 (2%) Strand=Plus/Plus Query 23247 CGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGAT 23305 ||||||| | ||| | || ||||| ||| | || || ||| || |||| ||| || | | Sbjct 293910 CGTACTTCTCGTAAAGAGCCTCAAACTCGTCGCCATAGACA-TCCGCCAAGCCTGGGGCT 293968 Query 23306 TGCATCGGACACATGAGACTCCACATTGAGTCATTTT---CAACGCGTCTCATAAAAAGA 23362 | | || || | |||| |||| | | |||||| |||| ||| ||||||| ||| Sbjct 293969 TCATTGGGGCAAAAGAGAGTCCA---TTCGCCATTTTTCTCAACACGTTTCATAAACAGA 294025 Query 23363 TCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTC 23422 || ||| |||| ||||| ||| || ||||| || || || ||||| || ||| |||| Sbjct 294026 TCGGGTGTCCAGAGAGCCAGGAAGAGATCGCGAGCCCGAACTTCCTCCTTTCCGTGGTTC 294085 Query 23423 TTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAAC 23482 || | ||||| || || || | || | ||||||||||| ||||||| || || Sbjct 294086 TTACGAAGGTCCAAGAATTCGAAGATATCGGTGTGCCACGGCTCAAGGTAAATAGCGAAA 294145 Query 23483 GCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTT 23542 || ||||| | ||| || || ||||| ||||| || | || ||||||||| | |||| Sbjct 294146 GCTCCCGGCCGCTTGTTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACTCGC 294205 Query 23543 AGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG--CCCGCCACACTCGAACCTTTTG 23600 ||||| || |||| |||||||| | || | | || || || | ||||| | Sbjct 294206 AGCATGGGAACGATTCCGTTGGAGGAGC--CATTCGTTCCGGCAATGTAAGAACCAGTGC 294263 Query 23601 CTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATT 23660 | |||| | ||||| || || || || || || | | || || |||| || || Sbjct 294264 CACGAATGCGGTGAATGTTGAGGCCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAG 294323 Query 23661 GTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACG 23720 |||| |||||||| || |||||||| |||||||| || | ||| | ||| |||| Sbjct 294324 TCTTCAACGTGTCGTAAATACCCTCGATACTGTCCTCCTTCATGTCGATAAGGAAGCACG 294383 Query 23721 AAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGT 23780 ||| ||| || | || || ||| | || ||| || || || || ||||| ||| Sbjct 294384 AAGCCATCTGAGGTTGCGGGGTACCAGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGA 294443 Query 23781 ATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATAC 23840 || | ||||| || || || || |||||| | || | || |||||||| || | Sbjct 294444 ATTTTTGAGACATGAGGTTATATGTTTCGATGACTTTCTCTACATCGTCTCCGTGAATTC 294503 Query 23841 CGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGA 23900 ||| || || ||||| ||||||| ||| || | || | |||||| ||| | Sbjct 294504 CGACAGCAACACGCATGATCATGTGTTGGGGGCGTTCAGCAACTTTGCCGTTGATTCGAA 294563 Query 23901 ACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 || ||| || || | || || || ||||| || || | ||||| ||||||||||| | Sbjct 294564 GCAAATAAGACCGCTCCAAAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCACGATCAT 294623 Query 23961 GCACTATGGCCGAATTCAA 23979 || ||||| ||||| || Sbjct 294624 AGACAATGGCAGAATTAAA 294642 >seq73 Length=4627324 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| || || || | || |||| ||||| ||||||||||| || ||||| || Sbjct 220854 CCACCTTTGCACAGCGTCTCGTCGCCTTCGCTGCCGTCGAAGGCATCTTCTTCAGTGGAT 220913 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 ||| || | || || ||| |||||||||| ||||| ||||| ||||| |||||| | Sbjct 220914 CCTTCGCTTCGATCTTCTGGTTGAAGAAACGGGGCCTCATGCCTGGCCTTACGTTTTCTA 220973 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 ||||| | || || || |||||||| | || |||||||| || || || | | ||||| Sbjct 220974 ACGAGCTTATTTCTCGTGACGAGGGCTTACACACTGATTTCGCCTGTCTCCTCTTCTCTC 221033 Query 58138 AC 58139 || Sbjct 221034 AC 221035 >seq103 Length=249856 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || |||||| | || || || | ||||| | || Sbjct 43377 TTCGTCAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATC 43318 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | ||| ||||||||| ||| | || |||||||||||||| | Sbjct 43317 GACAATGTCAAGAGTAAAATCCAGGACAAGGAGGGCATCCCACCCGACCAGCAGCGATTG 43258 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||| ||||| ||| | || ||| ||| | ||||||||||||||||| || Sbjct 43257 ATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACGCTTAGCGATTATAACATTCAGAA 43199 >seq75 Length=1151455 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| || || || || ||||| || || ||| | || || ||| | || || | ||| Sbjct 639383 TCGTCAAAACCCTCACTGGCAAGACTATTACCTTGGAGGTGGAATCTTCGGATACCATCG 639324 Query 31263 AAACGGTCAAACAG-AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | || ||| || | ||| ||| || |||||| | || || |||||||| ||| | Sbjct 639323 ACAACGT-AAAGAGCAAAATCCAGGATAAAGAAGGCATCCCCCCAGACCAGCAACGTTTG 639265 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || |||||||| || ||| | ||||| || || |||||||||||| |||||| Sbjct 639264 ATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGTACCTTGTCCGATTATAACATCCAAAAA 639205 Query 31382 GAATCGACTCTTCATCTGGTACTT 31405 ||||| || || ||||| || ||| Sbjct 639204 GAATCCACCCTCCATCTTGTCCTT 639181 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || |||||||| |||||||| ||||| | || || || ||| Sbjct 638937 ATGCAGATCTTCGTGAAAACTCTGACCGGCAAAACTATCACACTTGAAGTCGAGAGCTCC 638878 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | ||| || |||||||| | || || || ||| Sbjct 638877 GACACAATTGATAACGTAAAAAGCAAAATCCAAGATAAGGAAGGGATTCCACCAGATCAG 638818 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| | ||||| ||| | ||||||||| Sbjct 638817 CAGCGTCTCATCTTTGCTGGTAAGCAGCTAGAAGATGGCCGGACGCTTTCTGATTATAAC 638758 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| ||| |||| | ||| || |||| || Sbjct 638757 ATTCAGAAGGAGAGCACTCTCCATTTGGTGTTGAGATTGCGGGGTGG 638711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765798215360