Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emergomyces_20orientalis_20[genbank_20GCA_5F002110485.1_202017-04- 25] 108 sequences; 35,498,521 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq79 226 4e-54 seq73 111 2e-19 >seq79 Length=405269 Score = 226 bits (250), Expect = 4e-54 Identities = 586/893 (66%), Gaps = 0/893 (0%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 || |||||||| || | |||| |||| | || ||||| || || | | | | Sbjct 293930 TCAAACTCGTCGCCATAGACATCCGCCAAGCCTGGGGCTTCATTGGGGCAAAAGAGAGTC 293989 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 || || || | | || || ||||||||||| ||||| || |||| ||||| | || Sbjct 293990 CATTCGCCATTTTTCTCAACACGTTTCATAAACAGATCGGGTGTCCAGAGAGCCAGGAAG 294049 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 ||||| | | | | |||||| ||||| ||||| ||| || | ||| | | Sbjct 294050 AGATCGCGAGCCCGAACTTCCTCCTTTCCGTGGTTCTTACGAAGGTCCAAGAATTCGAAG 294109 Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 ||||| | |||||||| || | ||| || || | | |||| ||||| ||||| |||||| Sbjct 294110 ATATCGGTGTGCCACGGCTCAAGGTAAATAGCGAAAGCTCCCGGCCGCTTGTTACCTCCC 294169 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 || || | |||||||| ||||| || |||||| || ||| |||| || ||||| || Sbjct 294170 TGGTCGACATATCTAGCAGTGTTGTTGAAAACTCGCAGCATGGGAACGATTCCGTTGGAG 294229 Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCT 63548 ||||| || |||| || || ||| || ||||||| ||| || || Sbjct 294230 GAGCCATTCGTTCCGGCAATGTAAGAACCAGTGCCACGAATGCGGTGAATGTTGAGGCCA 294289 Query 63549 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCT 63608 || || || || | || || || || || || || |||||||| || || || || Sbjct 294290 ATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCG 294349 Query 63609 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCC 63668 || || || || |||||| | || || || || ||| || | | | || || Sbjct 294350 ATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCA 294409 Query 63669 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63728 ||||| || | |||||||||||| ||||| || |||||| ||| | || || || || Sbjct 294410 GCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATATGTT 294469 Query 63729 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63788 || || || |||| ||| | |||||||| || || |||||||| | |||||| Sbjct 294470 TCGATGACTTTCTCTACATCGTCTCCGTGAATTCCGACAGCAACACGCATGATCATGTGT 294529 Query 63789 TGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63848 || || | |||| ||| |||| ||| ||| | ||| || || |||||||| || Sbjct 294530 TGGGGGCGTTCAGCAACTTTGCCGTTGATTCGAAGCAAATAAGACCGCTCCAAAGTCTTG 294589 Query 63849 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCC 63908 || || || || | ||| ||||| || || || | ||| | ||||| | | ||| Sbjct 294590 AATCCGAAGTATTGGTAGTTGAAGTCACGATCATAGACAATGGCAGAATTAAATTCATCT 294649 Query 63909 TTATATTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTT 63968 || | | ||| | || || || || ||||| | | || ||| Sbjct 294650 GCATGTCGCATCACTGTTTCGTACGTGCCCTGCGATATCATCGGGGCAGGTCGTTGATTC 294709 Query 63969 TTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCC 64028 || || |||| ||| | | | | || || ||||| | || |||| || |||| | Sbjct 294710 TTCGGGTTAATATAATGGTACAGGTCATCTATCACGGAAGAGAACTGTTTCTTAGTTTGC 294769 Query 64029 TTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 ||||| ||||| |||| ||||| | ||| ||||| |||||||| || ||||| Sbjct 294770 TTGTGGAGATTGGATACAGCTATCCGGGCAGCTAGGATGGCATAGTCTGGATG 294822 Score = 96.9 bits (106), Expect = 4e-15 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 62939 CAATGCAACAGATGCCAGATTACACACGGCTACCTCAT-TAGCATCCGCATATTGTATTA 62997 ||| |||| ||| ||||| ||||| || || || |||| | || | ||||| || | Sbjct 293616 CAAAGCAATAGACGCCAGGTTACAAACTGCAACTTCATCTGGCGAGCA-ATATTCGATGA 293674 Query 62998 TCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGT 63057 |||||||||| || ||| | | || || || | || | |||||| ||||| |||| Sbjct 293675 TCTCAGTGCATAGGTTAGAGCTTCTAATTGTGCCGAGGTTCTTTTGATTGCTCTTCTTGT 293734 Query 63058 TACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 63117 | ||||| ||||| ||||| || ||||| ||||||| ||| | |||| ||| | ||| | Sbjct 293735 TGCACGCGTCCTTGTAAAGCATAAATGGGTTACCAGTCTCAGTTTGAGCTTCAAGAATAG 293794 Query 63118 CTTTCCA 63124 | | ||| Sbjct 293795 CATACCA 293801 >seq73 Length=4627324 Score = 111 bits (122), Expect = 2e-19 Identities = 287/435 (66%), Gaps = 2/435 (0%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || ||||| || || ||||| |||||||| || || || || || ||| || || || Sbjct 221310 TTCTGGTAGTCGCCGACACGCTTTTCGAAGAAGTTGGTCTTGCCGGCCAGGGAGATGTTG 221251 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| ||||| || ||||| || || | ||| || ||||| || | Sbjct 221250 TCCATGAAGTCAAATGGGTTGGTGGAGTTATAGACTTTCTTGTTGCCCAAAGCAACGAGG 221191 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 | | ||| |||||||| || || ||| ||| | | |||||||| | || Sbjct 221190 AGGCGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCAAGAAGC 221131 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 || || ||||| | | ||| || || || || || | || || | || || || Sbjct 221130 GCGACCGGGAGAGCATCTGAAAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATC 221071 Query 33531 AATCTA-ACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 ||| || | |||| || || | || || || || | | ||| ||||| Sbjct 221070 C-TCTCGACAGCCTCTTGGCTGGGACGGTGACGCAAGTGAGAGAAGAGGAGACAGGCGAA 221012 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 ||| ||| | |||||||| | | ||| | |||||||||||||| || || ||||| Sbjct 221011 ATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGGCCAGGCAT 220952 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 ||||| || || || | ||| || || |||||||| ||||| |||||||| ||||| Sbjct 220951 GAGGCCCCGTTTCTTCAACCAGAAGATCGAAGCGAAGGATCCACTGAAGAAGATGCCTTC 220892 Query 33710 TACTGCAGCAAAGGC 33724 || ||||| ||||| Sbjct 220891 GACGGCAGCGAAGGC 220877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816749746240