Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emergomyces_20orientalis_20[genbank_20GCA_5F002110485.1_202017-04- 25] 108 sequences; 35,498,521 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq75 114 1e-20 seq103 89.7 5e-13 seq49 86.0 6e-12 >seq75 Length=1151455 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || || | ||| || || || | || ||| || |||||||||||||| Sbjct 638708 TGGCCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTATAATCA 638767 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | ||||| ||||| ||||||||| |||| ||||| |||||||| || Sbjct 638768 GAAAGCGTCCGGCCATCTTCTAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGT 638827 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || ||||| || || |||||| ||||| | || | |||||||| | ||| Sbjct 638828 GGAATCCCTTCCTTATCTTGGATTTTGCTTTTTACGTTATCAATTGTGTCGGAGCTCTCG 638887 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || |||| || | || |||||||||| ||||| ||||| || |||||| Sbjct 638888 ACTTCAAGTGTGATAGTTTTGCCGGTCAGAGTTTTCACGAAGATCTGCATA 638938 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || |||||||| |||||||||||| || || | ||||||||||| || ||| Sbjct 639197 GTGGATTCTTTTTGGATGTTATAATCGGACAAGGTACGGCCATCTTCGAGCTGCTTTCCA 639256 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| ||||||||| || || || ||||||||||| || |||||| ||| Sbjct 639257 GCGAAGATCAAACGTTGCTGGTCTGGGGGGATGCCTTCTTTATCCTGGATTTTGCTCTTT 639316 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | | |||||||| | ||| | |||||||| || | ||| Sbjct 639317 ACGTTGTCGATGGTATCCGAAGATTCCACCTCCAAGGTAATAGTCTTGCCAGTGAGGGTT 639376 Query 139748 TTTACGA 139754 || |||| Sbjct 639377 TTGACGA 639383 >seq103 Length=249856 Score = 89.7 bits (98), Expect = 5e-13 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 139577 TTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATC 139636 || ||||||||||||||||| | || | ||| || ||||| || || || ||||| Sbjct 43199 TTCTGAATGTTATAATCGCTAAGCGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 43258 Query 139637 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCC 139696 | || ||||| ||||| || ||||| || ||||| |||||| || | | || Sbjct 43259 AATCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATTTTACTCTTGACATTGTCG 43318 Query 139697 ACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAA- 139755 | |||||| ||| ||| ||||||| ||| | |||||||| || | || || ||||| Sbjct 43319 ATAGTGTCGCTGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTGACGAAG 43378 Query 139756 -TATTT 139760 ||||| Sbjct 43379 CTATTT 43384 >seq49 Length=1984306 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||||| || ||||||||||||||||| || ||| Sbjct 95357 CCACCACGCAGACGCAGGACGAGGTGAAGGGTCGACTCTTTTTGAATGTTGTAGTCGGAA 95416 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || ||||||||||| || || ||||||| |||||||| ||||| || Sbjct 95417 AGGGTACGGCCATCCTCGAGCTGTTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGGGGG 95476 Query 139658 ATGCCTTCTTTGTCGGT 139674 || || |||||||| || Sbjct 95477 ATTCCCTCTTTGTCTGT 95493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063330313600