Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emergomyces_20orientalis_20[genbank_20GCA_5F002110485.1_202017-04- 25] 108 sequences; 35,498,521 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq73 127 2e-24 seq103 123 2e-23 seq49 107 2e-18 seq75 100 3e-16 >seq73 Length=4627324 Score = 127 bits (140), Expect = 2e-24 Identities = 342/515 (66%), Gaps = 15/515 (3%) Strand=Plus/Plus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATC-AACAGCAGCACCGCGAC 46145 || ||| | |||||||| | || ||||| || ||||||| || | || | | | Sbjct 220799 CCCTGCATCCGCAAGAAGGCTGATTGGGCTATCCGGTGGATCGAAGATAAGGAGTCCACC 220858 Query 46146 TTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTT 46205 ||| || ||||| | || ||||| || || || ||| |||| || ||| || Sbjct 220859 TTT-GCACAGCGTCTCGTCGCCTTCGCTGCCGTCGAAGGCATCTTCTTCAGTGGATCCTT 220917 Query 46206 TGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 || | ||||| | | || | |||| ||||||| ||||| |||||| ||||| Sbjct 220918 CGCTTCGATCTTCTGGTTGAAGAAACGGGGCCTCATGCCTGGCCTTACGTTTTCTAACGA 220977 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTA-TAACACTC 46324 ||| || || || ||||||||| | || || || || || |||||| || | |||| Sbjct 220978 GCTTATTTCTCGTGACGAGGGCTTACACACTGATTTCGCCTGTCTCCTCTTCTCTCACTT 221037 Query 46325 GCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCA 46384 |||| || | | || | || | || ||| || ||| || || || | | Sbjct 221038 GCGTCACCGTC---CCAGC-CAAGAGGCTGTCGAGAGGATCATCACTGAAGCTGTCACTA 221093 Query 46385 TTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGT 46444 | ||| ||||||| || | | || || || | || || || || |||||||| || Sbjct 221094 TCGAGCAGGAGTTCCTTTCAGATGCTCTCCCGGTCGCGCTTCTTGGAATGAACGCCAAGC 221153 Query 46445 CAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTT----CACCAG 46500 |||||| | ||||| ||||| || || || || || ||||| |||| || || Sbjct 221154 TCATGTGCCAATACATTGAGTTCGTCGCTGATCGCCTCCTCGTT--GCTTTGGGCAACAA 221211 Query 46501 CCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGC 46560 ||| | | || | ||| |||||||| || ||| ||||||||||||||| ||| Sbjct 221212 --GAAAGTCTATAACTCCACCAACCCATTTGACTTCATGGACAACATCTCCCTGGCCGGC 221269 Query 46561 AAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || || || || ||||||||||| |||||||| || Sbjct 221270 AAGACCAACTTCTTCGAAAAGCGTGTCGGCGACTA 221304 >seq103 Length=249856 Score = 123 bits (136), Expect = 2e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| |||||||| |||||||| | || || |||||| ||||||||||| ||| ||| Sbjct 43197 CCTTCTGAATGTTATAATCGCTAAGCGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 43256 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || ||||| || || ||||| |||||| ||||| | | Sbjct 43257 TCAATCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATTTTACTCTTGACATTGT 43316 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | ||| ||| ||||||||| || | ||| | ||| || || ||||| || || |||| Sbjct 43317 CGATAGTGTCGCTGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTGACGA 43376 Query 131225 A 131225 | Sbjct 43377 A 43377 >seq49 Length=1984306 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| || | || | ||||||||| |||||||||||||| ||| Sbjct 95357 CCACCACGCAGACGCAGGACGAGGTGAAGGGTCGACTCTTTTTGAATGTTGTAGTCGGAA 95416 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||| ||||| ||| |||| | || |||||||| || ||| Sbjct 95417 AGGGTACGGCCATCCTCGAGCTGTTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGGGGG 95476 Query 131128 ATTCCTTCTTTGTCGGT 131144 ||||| |||||||| || Sbjct 95477 ATTCCCTCTTTGTCTGT 95493 >seq75 Length=1151455 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| ||||| | || ||| ||||| | || |||||| |||||||| ||||| Sbjct 638710 GCCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTATAATCAGA 638769 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || || ||||||||||| || || |||| | ||||||||| || || || Sbjct 638770 AAGCGTCCGGCCATCTTCTAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGTGG 638829 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || |||||| || | | || | || |||| | ||||| Sbjct 638830 AATCCCTTCCTTATCTTGGATTTTGCTTTTTACGTTATCAATTGTGTCGGAGCTCTCGAC 638889 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| ||||| |||||||| ||||| |||||||| Sbjct 638890 TTCAAGTGTGATAGTTTTGCCGGTCAGAGTTTTCACGAAGATCTGCAT 638937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012162782720