Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emergomyces_20orientalis_20[genbank_20GCA_5F002110485.1_202017-04-
25] 108 sequences; 35,498,521 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq73 91.5 2e-13
seq79 82.4 9e-11
>seq73
Length=4627324
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019
||| || |||||| |||| |||||||| | | || | || |||||||| || |
Sbjct 221020 ACAGGCGAAATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAG 220961
Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079
|||||||| || || | ||| || |||||||| || ||||| || |||||| |||||
Sbjct 220960 GCCAGGCATGAGGCCCCGTTTCTTCAACCAGAAGATCGAAGCGAAGGATCCACTGAAGAA 220901
Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139
|| ||||| || || || || || || || | | | || | | | || |||| |
Sbjct 220900 GATGCCTTCGACGGCAGCGAAGGCGACGAGACGCTGTGCAAAGGTGGACTCCTTATCTTC 220841
Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTT 19169
||||| | |||||||||||||||||
Sbjct 220840 GATCCACCGGATAGCCCAATCAGCCTTCTT 220811
>seq79
Length=405269
Score = 82.4 bits (90), Expect = 9e-11
Identities = 200/300 (67%), Gaps = 5/300 (2%)
Strand=Plus/Plus
Query 46971 TCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATA 47030
|||| ||||| ||||| | ||||||| || | |||| || | |||||||||
Sbjct 292702 TCTTGGTCCACGGTAAATTGAATTGGAGCTGAGGCAGCCATTGTACGGAGATAATACATT 292761
Query 47031 CCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAAC-T 47089
|| || || || || | |||| ||| ||||||||| || || ||| | | | |
Sbjct 292762 CCGGTTTTCAAGCCAAGTTTCCAACCAGTGAAATGCATGCTGGT-AATCTTGCCCATGGT 292820
Query 47090 AGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGC 47149
|| || | ||| ||||| |||||||| || |||||||||||||||| ||||||
Sbjct 292821 CGGCTCCTTCAAATGGATATTGAGAGATTGGGATTGGTCAATAAATGCACCTCGATCAGC 292880
Query 47150 TGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAAT 47209
||||| | | ||| | || | ||| ||||| || || ||||| | | ||| ||
Sbjct 292881 AGCCATCTGGACTATAGTTCGCTGAGATATTTCCCACACGGTCTTATATAGTGCTTTTAT 292940
Query 47210 GTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCGTTTTCTATAATTTTGTTTTT 47266
|| | ||| | || | | || ||||| || ||||| | | ||||| ||||||
Sbjct 292941 ATCCTGTGGAATGTTGGGAATGTTCTGAATCGAGCCTCCATCCGCAATAATACGGTTTTT 293000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108041153120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |