Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emergomyces_20orientalis_20[genbank_20GCA_5F002110485.1_202017-04- 25] 108 sequences; 35,498,521 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq73 91.5 2e-13 seq79 82.4 9e-11 >seq73 Length=4627324 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| || |||||| |||| |||||||| | | || | || |||||||| || | Sbjct 221020 ACAGGCGAAATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAG 220961 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 |||||||| || || | ||| || |||||||| || ||||| || |||||| ||||| Sbjct 220960 GCCAGGCATGAGGCCCCGTTTCTTCAACCAGAAGATCGAAGCGAAGGATCCACTGAAGAA 220901 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || ||||| || || || || || || || | | | || | | | || |||| | Sbjct 220900 GATGCCTTCGACGGCAGCGAAGGCGACGAGACGCTGTGCAAAGGTGGACTCCTTATCTTC 220841 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTT 19169 ||||| | ||||||||||||||||| Sbjct 220840 GATCCACCGGATAGCCCAATCAGCCTTCTT 220811 >seq79 Length=405269 Score = 82.4 bits (90), Expect = 9e-11 Identities = 200/300 (67%), Gaps = 5/300 (2%) Strand=Plus/Plus Query 46971 TCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATA 47030 |||| ||||| ||||| | ||||||| || | |||| || | ||||||||| Sbjct 292702 TCTTGGTCCACGGTAAATTGAATTGGAGCTGAGGCAGCCATTGTACGGAGATAATACATT 292761 Query 47031 CCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAAC-T 47089 || || || || || | |||| ||| ||||||||| || || ||| | | | | Sbjct 292762 CCGGTTTTCAAGCCAAGTTTCCAACCAGTGAAATGCATGCTGGT-AATCTTGCCCATGGT 292820 Query 47090 AGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGC 47149 || || | ||| ||||| |||||||| || |||||||||||||||| |||||| Sbjct 292821 CGGCTCCTTCAAATGGATATTGAGAGATTGGGATTGGTCAATAAATGCACCTCGATCAGC 292880 Query 47150 TGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAAT 47209 ||||| | | ||| | || | ||| ||||| || || ||||| | | ||| || Sbjct 292881 AGCCATCTGGACTATAGTTCGCTGAGATATTTCCCACACGGTCTTATATAGTGCTTTTAT 292940 Query 47210 GTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCGTTTTCTATAATTTTGTTTTT 47266 || | ||| | || | | || ||||| || ||||| | | ||||| |||||| Sbjct 292941 ATCCTGTGGAATGTTGGGAATGTTCTGAATCGAGCCTCCATCCGCAATAATACGGTTTTT 293000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108041153120