Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emergomyces_20orientalis_20[genbank_20GCA_5F002110485.1_202017-04- 25] 108 sequences; 35,498,521 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq50 132 3e-25 seq75 107 1e-17 seq25 86.0 4e-11 >seq50 Length=1359123 Score = 132 bits (146), Expect = 3e-25 Identities = 325/488 (67%), Gaps = 6/488 (1%) Strand=Plus/Plus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| |||||||| ||||| ||||| | || || || || | ||| | || || || Sbjct 181980 GAAATCATTGCCAACGACCAGGGTAACCGGACCACGCCCTCGTTCGTTGCCTTCACAGAC 182039 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | ||| || || |||||||| || |||||| || || || ||||| Sbjct 182040 ACAGAGCGTCTCATCGGCGATGCTGCAAAGAATCAAGTCGCCATGAACCCAAGCAATACA 182099 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||| || || || | | ||||| || || || | ||| | ||||| |||||| Sbjct 182100 GTTTTCGACGCAAAGCGTCTCATTGGCCGCAAGTTCGCCGATGCTGAGGTCCAGTCTGAT 182159 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAAGCAA 474629 ||| |||| || || ||| | || | ||||| || || || ||| | Sbjct 182160 ATGAAGCATTTCCCCTTCAAGATCATTGACAAGGGTGGCAAGCCTGTCATTCAGATTGAG 182219 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || || || || | || | || ||| |||| || || ||||| | ||| Sbjct 182220 TTCAAG--GGCGAGACGAAGGAGTTCACTCCCGAAGAAATCTCCTCCATGGTCCTCACCA 182277 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | | || || ||| ||||||||||| || | | | || || | ||| Sbjct 182278 AGATGAGAGAGACTGCTGAG-TCATATCTTGGTGGCACCGTCAATAACGCCGTTGTCACT 182336 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 ||||| || || || ||||| || ||||| ||||| || || ||||| || ||||| Sbjct 182337 GTTCCCGCCTACTTCAATGACTCCCAACGCCAAGCTACCAAGGATGCTGGTCTCATTGCT 182396 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| ||||| | ||||| || || || || || || || || ||||||| || ||| Sbjct 182397 GGTCTCAATGTCCTCCGTATCATCAACGAGCCTACTGCTGCTGCCATTGCTTACGGCCTT 182456 Query 474869 GATAAGAA 474876 || ||||| Sbjct 182457 GACAAGAA 182464 >seq75 Length=1151455 Score = 107 bits (118), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || ||||| || ||||| |||||| | ||| || || | || || Sbjct 638944 ACGAAGACGAAGGACAAGGTGGAGTGTGGATTCTTTTTGGATATTGTAGTCTGAGAGTGT 639003 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | || ||||| || ||||| || || || || ||||| || || || || || || Sbjct 639004 TCGGCCGTCCTCAAGCTGTTTTCCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGGATACC 639063 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| || |||||||| || ||| || ||||| ||||| | | | |||||| Sbjct 639064 TTCTTTATCTTGAATTTTGCTTTTAACGTTGTCAATGGTATCTGAGCTTTCGACTTCAAG 639123 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| ||||| || ||||||||||| || || Sbjct 639124 AGTAATCGTTTTGCCGGTCAGGGTCTTAACGAAGATCTG 639162 Score = 87.8 bits (96), Expect = 1e-11 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| |||||||| ||||| || ||||| ||||| || |||||||| || ||||||||| Sbjct 639554 TCTTCCAGTTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCAGGAGGGATACCTTCCTTG 639613 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || || ||||| || || ||||||||| Sbjct 639614 TCCTGGATTTTGGACTTGACTGCGTCGATAGTATCA 639649 >seq25 Length=1692869 Score = 86.0 bits (94), Expect = 4e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || || || |||||||| ||||||||||| || |||||||| || ||| Sbjct 1403003 ACAGTCCCCGCCTACTTCAATGATTCCCAACGTCAAGCTACCAAAGATGCTGGTCAGATT 1403062 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || |||||||| || | ||| || | || || || ||||| || || ||||| || ||| Sbjct 1403063 GCTGGTCTTAACGTGCTCCGTGTTGTCAACGAGCCTACAGCTGCTGCTCTTGCCTACGGT 1403122 Query 474866 CTTGA 474870 || || Sbjct 1403123 CTCGA 1403127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268174567355984