Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emergomyces_20orientalis_20[genbank_20GCA_5F002110485.1_202017-04- 25] 108 sequences; 35,498,521 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq103 113 3e-20 seq75 107 1e-18 seq49 95.1 8e-15 >seq103 Length=249856 Score = 113 bits (124), Expect = 3e-20 Identities = 140/187 (75%), Gaps = 10/187 (5%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGC-TGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||||| | || || || | || | || || || ||||| ||||||||| Sbjct 43197 CCTTCTGAATGTTATAAT-CGCTAAGCGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 43255 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||| |||||||| | || | ||||||||||| | ||||| ||||| || Sbjct 43256 ATCAATCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATTTTACTCTTGAC--AT 43313 Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 | ||||| || ||| |||||| |||| ||| |||||||| ||||| |||||||| Sbjct 43314 --TGTCGATAGTGTCGCTGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTT 43371 Query 34963 TACAAAG 34969 || ||| Sbjct 43372 GACGAAG 43378 >seq75 Length=1151455 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||| ||| |||| |||| || | ||||||||||||||||||||||| || || Sbjct 638711 CCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTATAATCAGAA 638770 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| || || ||||| || || ||||| || || ||||| ||| | || Sbjct 638771 AGCGTCCGGCCATCTTCTAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGTGGA 638830 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||| ||||| || | ||||| ||| ||| | || | || | |||||| Sbjct 638831 ATCCCTTCCTTATCTTGGATTTTGCTTTTTACGTTATCAATTGTGTCGGAGCTCTCGACT 638890 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || || || || || || || || ||||||||||| Sbjct 638891 TCAAGTGTGATAGTTTTGCCGGTCAGAGTTTTCACGAAGATCTGCAT 638937 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||||||||| ||||| ||||| || ||| | || | || Sbjct 639497 AGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCT 639556 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| || |||||||| || ||||||||||| | || | || |||||||| Sbjct 639557 TCCAGTTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCAGGAGGGATACCTTCCTTGTCC 639616 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||||| | | || | ||| | ||| || || | || |||||| Sbjct 639617 TGGATTTTGGACTTGACTGCGTCGATAGTATCACCTGACTCAACGTCGAGAGTGATGGTC 639676 Query 34946 TTTCCCGT 34953 ||||| || Sbjct 639677 TTTCCGGT 639684 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| || || || || || ||||| || || | || | || Sbjct 638954 AGGACAAGGTGGAGTGTGGATTCTTTTTGGATATTGTAGTCTGAGAGTGTTCGGCCGTCC 639013 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || |||||||||||||| ||||||||||||||| | || | || || || || Sbjct 639014 TCAAGCTGTTTTCCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGGATACCTTCTTTATCT 639073 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||| ||| | || | || | ||||| |||| || || || Sbjct 639074 TGAATTTTGCTTTTAACGTTGTCAATGGTATCTGAGCTTTCGACTTCAAGAGTAATCGTT 639133 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||||||||| Sbjct 639134 TTGCCGGTCAGGGTCTTAACGAAGATCTGCAT 639165 >seq49 Length=1984306 Score = 95.1 bits (104), Expect = 8e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| ||||||| ||| ||| || |||||||| ||||| || ||| | || |||| Sbjct 95371 CAGGACGAGGTGAAGGGTCGACTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGGCCATC 95430 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || || |||||||||||||| ||||||||||| | || | ||||| ||||| Sbjct 95431 CTCGAGCTGTTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGGGGGATTCCCTCTTTGTC 95490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692371306852