Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emergomyces_20orientalis_20[genbank_20GCA_5F002110485.1_202017-04- 25] 108 sequences; 35,498,521 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq75 174 4e-38 seq103 116 9e-21 seq49 111 4e-19 >seq75 Length=1151455 Score = 174 bits (192), Expect = 4e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || |||||||| || || || || ||||||||||| Sbjct 639162 CAGATCTTCGTTAAGACCCTGACCGGCAAAACGATTACTCTTGAAGTCGAAAGCTCAGAT 639103 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| || ||||| || |||||||| ||||| || ||||||||| Sbjct 639102 ACCATTGACAACGTTAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCAGACCAGCAA 639043 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||||||||||||||| || || || | || || | || || || || Sbjct 639042 CGACTCATCTTCGCCGGAAAACAGCTTGAGGACGGCCGAACACTCTCAGACTACAATATC 638983 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| ||||| || ||||| Sbjct 638982 CAAAAAGAATCCACACTCCACCTTGT 638957 Score = 174 bits (192), Expect = 4e-38 Identities = 160/200 (80%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| ||||| ||||| || || || || ||| | ||||||||| || || ||||||| Sbjct 639383 TCGTCAAAACCCTCACTGGCAAGACTATTACCTTGGAGGTGGAATCTTCGGATACCATCG 639324 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | ||||| || || || ||||| |||||||| ||||| || ||||||||||| | | Sbjct 639323 ACAACGTAAAGAGCAAAATCCAGGATAAAGAAGGCATCCCCCCAGACCAGCAACGTTTGA 639264 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAA 178109 ||||||| ||||| |||||||||||||| | || |||| ||||||||||| |||||||| Sbjct 639263 TCTTCGCTGGAAAGCAGCTCGAAGATGGCCGTAC-CTTGTCCGATTATAACATCCAAAAA 639205 Query 178110 GAATCAACACTGCATCTTGT 178129 ||||| || || |||||||| Sbjct 639204 GAATCCACCCTCCATCTTGT 639185 Score = 136 bits (150), Expect = 1e-26 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||||||||| || || ||||| ||||| || || || || ||||| ||| Sbjct 638934 CAGATCTTCGTGAAAACTCTGACCGGCAAAACTATCACACTTGAAGTCGAGAGCTCCGAC 638875 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| || || || || || ||||| || || || || ||||| Sbjct 638874 ACAATTGATAACGTAAAAAGCAAAATCCAAGATAAGGAAGGGATTCCACCAGATCAGCAG 638815 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| |||| ||| | ||||||||| | Sbjct 638814 CGTCTCATCTTTGCTGGTAAGCAGCTAGAAGATGGCCGGACGCTTTCTGATTATAACATT 638755 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || || || || ||| | || |||||| Sbjct 638754 CAGAAGGAGAGCACTCTCCATTTGGTGTTGAGA 638722 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/189 (72%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAA--AGCTCAGACACCATCGAGAACGTCAAAC 178002 || ||||| || ||||| ||||| || || || | || || ||||| ||||| Sbjct 639684 ACCGGAAAGACCATCACTCTCGACGTTGAGTCAGGT--GATACTATCGACGCAGTCAAGT 639627 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 || || |||||||| ||||| |||||||| ||||||||||| ||||||||||| || | Sbjct 639626 CCAAAATCCAGGACAAGGAAGGTATCCCTCCTGACCAGCAACGCCTTATCTTCGCTGGCA 639567 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | || || ||||| || | || || | || || ||| |||| || || || || || | Sbjct 639566 AGCAACTGGAAGACGGCCGTACCCTGTCAGACTACAACATCCAGAAGGAGTCTACCCTTC 639507 Query 178123 ATCTTGTTT 178131 | |||| || Sbjct 639506 A-CTTGGTT 639499 >seq103 Length=249856 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || |||||||| ||||| || | ||||| ||| Sbjct 43377 TTCGTCAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATC 43318 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| || || |||||||| || || ||||| || |||||||| ||| | Sbjct 43317 GACAATGTCAAGAGTAAAATCCAGGACAAGGAGGGCATCCCACCCGACCAGCAGCGATTG 43258 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || ||||| || || || |||| ||| |||||||||| | || || Sbjct 43257 ATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACGCTTAGCGATTATAACATTCAGAA 43199 >seq49 Length=1984306 Score = 111 bits (122), Expect = 4e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 |||||||| |||||||| || ||||||||||| || ||||||||||| ||||||||||| Sbjct 95490 GACAAAGAGGGAATCCCCCCCGACCAGCAACGCCTGATCTTCGCCGGCAAACAGCTCGAG 95431 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | || ||| |||| || ||| | |||||||| || || || || || || Sbjct 95430 GATGGCCGTACCCTTTCCGACTACAACATTCAAAAAGAGTCGACCCTTCACCTCGT 95375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729534336952