Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq302 132 1e-25 >seq302 Length=30871 Score = 132 bits (146), Expect = 1e-25 Identities = 191/266 (72%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || ||||| || | ||| |||||||| | | || || | ||| ||||| Sbjct 11431 ATCATCACTGAAGCTGTCACTATCGAGCAGGAGTTCCTCTCAGATGCGCTCCCA-GTCGC 11373 Query 230446 -CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 ||| | || |||||||| | || ||| | || ||||| || ||||| || || ||| | Sbjct 11372 GCTTCTCGGAATGAACGCCAAGCTCATGTGCCAATACATTGAGTTCGTCGCTGATCGCCT 11313 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 | ||||| | || || ||||||| |||||||| | ||||| |||| || ||||| Sbjct 11312 CCTCGTTGCTTTGGGCAACAAGAAAGTCTACAACTCCACCAACCCATTTGACTTCATGGA 11253 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624 ||| || || ||| || ||||||||||||||||| ||||| ||||||| |||| Sbjct 11252 TAACATCTCCCTGGCAGGTAAAACCAACTTCTTCGAAAAACGTGTTGGTGACTACCAGAA 11193 Query 230625 GCCTGGTGTGATG--AAGCCCGAAGA 230648 | | ||||| ||| |||| | |||| Sbjct 11192 GGCCGGTGTCATGGCAAGCACCAAGA 11167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057763768823720