Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq134 217 2e-51
>seq134
Length=7744
Score = 217 bits (240), Expect = 2e-51
Identities = 584/893 (65%), Gaps = 0/893 (0%)
Strand=Plus/Minus
Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010
||||||||| | || | |||| |||| || || ||||| || || | | | |
Sbjct 5161 TCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCATTGGGGCAAAAGAGAGTC 5102
Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070
|| || || | | || || || ||||||||||||||||| |||||||||||| ||
Sbjct 5101 CATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAAA 5042
Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 54130
||||| | | | | ||| || ||||| ||||| || || | ||| | | |
Sbjct 5041 AGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAAA 4982
Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190
||||||| ||||||||||| | || || | | | |||| |||||||| || ||||||
Sbjct 4981 ATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCCC 4922
Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250
|| || | |||||||| ||||| || |||| | || |||||||| || || || ||
Sbjct 4921 TGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGAG 4862
Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 54310
| ||||| || |||| || || || || ||||||| ||| |||||
Sbjct 4861 GATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACCA 4802
Query 54311 ATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 54370
|| || || || | || || || || || || || ||||| || || || |||||
Sbjct 4801 ATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCA 4742
Query 54371 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 54430
||||| || ||| |||||| | || || || || ||| || | | || ||
Sbjct 4741 ATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCG 4682
Query 54431 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 54490
||||| || | |||||||||||| ||||| || |||||| ||| | || || || ||
Sbjct 4681 GCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGTT 4622
Query 54491 TCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 54550
||||| | |||| ||| | ||||||||| || || |||||||| | ||||||
Sbjct 4621 TCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTGT 4562
Query 54551 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTA 54610
||||| | |||| | | ||| ||| ||| ||||| || || || | ||| ||
Sbjct 4561 TGAGGGCGTTCAGCAACTTTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTTG 4502
Query 54611 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCC 54670
|| || || || | || ||||| || || || | ||| | || || | || ||||
Sbjct 4501 AATCCGAAGTATTGATAATTGAAGTCACGATCATAGACAATGGCAGAATTAAATTCATCC 4442
Query 54671 TTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTT 54730
|| | ||| || ||| || || || || | | || |||
Sbjct 4441 GCATGCCGCATCACTGTTTCGTACGTAGCCTGCGATATCATTGGGGCAGGTCGTTGATTC 4382
Query 54731 TTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCT 54790
|| || |||| ||| | | | || | ||||| | |||| ||||||| ||||
Sbjct 4381 TTCGGGTTGATATAATGGTAGAGGTCATCTATCACCGAAGAAAATTGTTTTTTAGTTTGC 4322
Query 54791 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843
||||| ||||| ||||| ||||| | || ||||| || || || || || ||
Sbjct 4321 TTGTGGAGATTGGATACAGCTATCCGGGCAGCTAGGATTGCGTAGTCTGGGTG 4269
Score = 98.7 bits (108), Expect = 1e-15
Identities = 193/285 (68%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 52801 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 52860
||||| || || ||||| ||||| ||||| | | ||||| |||||||||||||| ||
Sbjct 6390 GTCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGT 6331
Query 52861 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATC 52920
||| ||||| || |||| || |||||||| || || | |||| |||| ||
Sbjct 6330 TTTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTGCCCATGGTCGGCTC 6271
Query 52921 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 52980
| ||||||||| | ||| || ||| ||||| || || || | || ||||||||
Sbjct 6270 CTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAGCCAT 6211
Query 52981 TTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTC 53040
| | || || || | |||||||| | || ||||| | || ||||| |
Sbjct 6210 CTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATATCCTG 6151
Query 53041 TGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAAT 53082
||| | ||| | | ||||||||||| || || || | |||||
Sbjct 6150 TGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAAT 6106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593688618765120
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