Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq302 165 8e-36
seq819 120 3e-22
seq1424 111 2e-19
seq1691 98.7 1e-15
>seq302
Length=30871
Score = 165 bits (182), Expect = 8e-36
Identities = 208/285 (73%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| ||||| || || || ||||||||||||||||| | || || | |||||
Sbjct 12095 ATCTGGCAAATGTATAAGAAAGCAGAGGCGTCGTTCTGGACTGCAGAAGAAATTGACCTC 12036
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAG 116752
|| || || ||| ||| | | |||||||| | ||||| | ||||||
Sbjct 12035 TCAAAAGATCTTCACGATTGGAACAACAGATTGAACGATGATGAGCGGTACTTCATCTCA 11976
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
|||||| |||| || |||||||| || ||||| |||||||| || ||||| ||||||
Sbjct 11975 CACGTGTTGGCATTCTTCGCCGCGTCGGATGGCATTGTCAACGAAAACCTGGTTGAGCGT 11916
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| |||||| ||||| ||||||| || |||||||||||||| |||||| |||
Sbjct 11915 TTCAGCGGGGAGGTTCAGGTTCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATG 11856
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | ||||| || | || || |||||||||||| |||
Sbjct 11855 GAGAACATTCACTCAGAGACCTACTCCCTCCTCATCGACACCTAC 11811
Score = 127 bits (140), Expect = 2e-24
Identities = 308/458 (67%), Gaps = 10/458 (2%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||| || || ||||| | || ||||| | | || ||| | |||| | |||| |
Sbjct 11691 AGAAAGCTGATTGGGCCATCCGATGGATTGAAGACAAGGAGTCTACCTTTGCGCAGCGTC 11632
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| || |||||||| || || || ||| ||||||| || ||||| | || || |
Sbjct 11631 TTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGATCCTTCGCTTCAATCTTCT 11572
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||||||||| || ||||| || || || || |||||||| || || | |
Sbjct 11571 GGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTTCTAACGAGCTTATTTCTCGTG 11512
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
||||||| | || || ||||||||| | || || || ||| || || || |
Sbjct 11511 ACGAGGGCTTACACACTGATTTTGCCTGTCTCCTCTTTTCTCACTTGCGTCACCGTCCTA 11452
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| | | ||| | |||| |||| || || ||| | ||||||||| ||||||
Sbjct 11451 GCCAAGAGGCTGTCGAGAGGATCATCACTGAAGCTGTCACTATCGAGCAGGAGTTCCTCT 11392
Query 117282 CCGAAGCGCTGCCGGT-GCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339
| || ||||| || || ||| || || ||| | || || || | |||| ||||||||
Sbjct 11391 CAGATGCGCTCCCAGTCGCG-CTTCTCGGAATGAA-CGCCAAGCTCATGTGCCAATACAT 11334
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA---CTACAACAC 117396
||||||||||| || | || || | ||| | ||| |||| | ||||||| |
Sbjct 11333 TGAGTTCGTCGCTGATCGCCTCCTCGT--TGCT-TTGGGCAACAAGAAAGTCTACAACTC 11277
Query 117397 GCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434
||||||| | ||||| ||| | ||||||| |||
Sbjct 11276 CACCAACCCATTTGACTTCATGGATAACATCTCCCTGG 11239
>seq819
Length=4427
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || |||||||| || || || |||||||| || || | || |||||| | |
Sbjct 1808 ATGCAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAAAGCTCA 1867
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | || | |||| | | || |||||||| ||||| | |||||
Sbjct 1868 GATACCATCGACAACGTTAAAAGCAAAA-TCCAAGATAAAGAGGGTATCCCACCAGACCA 1926
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||||||||| |||| ||| || |||||||| || |||| || || ||| |||||||||
Sbjct 1927 GCAACGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTACAA 1986
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||| || || |||| || || || || | ||| | | |||||
Sbjct 1987 TATCCAAAAAGAATCCACACTTCACCTTGTCCTTCGCCTTCGTGGCGG 2034
Score = 113 bits (124), Expect = 5e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| || || |||||||||||||| | || ||||| | |
Sbjct 2036 ATGCAGATCTTCGTGAAAACTCTGACTGGCAAAACCATCACACTGGAGGTCGAGAGCTCT 2095
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| || | |||| | | ||||| || || ||||| | || ||
Sbjct 2096 GACACAATTGACAACGTAAAAAGCAAAA-TCCAAGACAAGGAAGGGATCCCACCAGATCA 2154
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||||| |||| || || |||||||| || || | || || || ||||||||
Sbjct 2155 GCAGCGACTTATCTTTGCTGGTAAACAGCTAGAAGATGGTCGAACGCTTTCGGACTACAA 2214
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||| ||||||||| ||| || ||| | |||||| | ||| |||| |||
Sbjct 2215 CATTCAGAAGGAGAGCACTCTCCATTTGGTGTTGAGATTGCGGGGTGGC 2263
Score = 89.7 bits (98), Expect = 5e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
||||||| ||||| ||||| ||||| | ||||| || || || |||| ||| |||||
Sbjct 1330 AAAATTCAAGACAAGGAGGGTATCCCTCCTGACCAACAGCGCCTTATCTTCGCCGGCAAG 1389
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||||| || |||| || ||||| ||| ||||| |||||||||||| | || || ||
Sbjct 1390 CAGCTTGAGGACGGTCGTACCCTGTCCGATTACAATATCCAGAAGGAGTCTACCCTCCA 1448
>seq1424
Length=24560
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || ||||||||||| |||||||| | || ||||| ||| ||||| | |
Sbjct 23629 TTCGTCAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGACACCATC 23688
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| ||||| | || || ||||| ||||| | |||||||| ||| |
Sbjct 23689 GACAATGTCAAGAGTAAAATCCAGGATAAGGAGGGTATCCCACCCGACCAGCAGCGATTG 23748
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||||||||| || || | || || || | ||| || |||||||| |||
Sbjct 23749 ATCTTCGCCGGCAAACAGCTTGAGGATGGCCGGACGCTTAGCGATTATAACATCCAAAAG 23808
Query 40879 G 40879
|
Sbjct 23809 G 23809
>seq1691
Length=23441
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| | ||||||||||| | |||| ||| ||||||||||| ||
Sbjct 9107 GACAAGGAGGGCATTCCCCCCGACCAGCAACGCTTGATCTTCGCTGGCAAACAGCTTGAG 9048
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| || ||||| |||||||||||||| ||||| | || || || || ||| ||
Sbjct 9047 GACGGCCGTACCCTTTCTGACTACAACATCCAAAAGGAATCGACCCTTCACCTCGTGCTG 8988
Query 40903 CG 40904
||
Sbjct 8987 CG 8986
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515190579573440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |