Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq302 165 8e-36 seq819 120 3e-22 seq1424 111 2e-19 seq1691 98.7 1e-15 >seq302 Length=30871 Score = 165 bits (182), Expect = 8e-36 Identities = 208/285 (73%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||| || || || ||||||||||||||||| | || || | ||||| Sbjct 12095 ATCTGGCAAATGTATAAGAAAGCAGAGGCGTCGTTCTGGACTGCAGAAGAAATTGACCTC 12036 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAG 116752 || || || ||| ||| | | |||||||| | ||||| | |||||| Sbjct 12035 TCAAAAGATCTTCACGATTGGAACAACAGATTGAACGATGATGAGCGGTACTTCATCTCA 11976 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||| |||| || |||||||| || ||||| |||||||| || ||||| |||||| Sbjct 11975 CACGTGTTGGCATTCTTCGCCGCGTCGGATGGCATTGTCAACGAAAACCTGGTTGAGCGT 11916 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| |||||| ||||| ||||||| || |||||||||||||| |||||| ||| Sbjct 11915 TTCAGCGGGGAGGTTCAGGTTCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATG 11856 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || || |||||||||||| ||| Sbjct 11855 GAGAACATTCACTCAGAGACCTACTCCCTCCTCATCGACACCTAC 11811 Score = 127 bits (140), Expect = 2e-24 Identities = 308/458 (67%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||| || || ||||| | || ||||| | | || ||| | |||| | |||| | Sbjct 11691 AGAAAGCTGATTGGGCCATCCGATGGATTGAAGACAAGGAGTCTACCTTTGCGCAGCGTC 11632 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || |||||||| || || || ||| ||||||| || ||||| | || || | Sbjct 11631 TTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGATCCTTCGCTTCAATCTTCT 11572 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||||||||| || ||||| || || || || |||||||| || || | | Sbjct 11571 GGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTTCTAACGAGCTTATTTCTCGTG 11512 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||| | || || ||||||||| | || || || ||| || || || | Sbjct 11511 ACGAGGGCTTACACACTGATTTTGCCTGTCTCCTCTTTTCTCACTTGCGTCACCGTCCTA 11452 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | ||| | |||| |||| || || ||| | ||||||||| |||||| Sbjct 11451 GCCAAGAGGCTGTCGAGAGGATCATCACTGAAGCTGTCACTATCGAGCAGGAGTTCCTCT 11392 Query 117282 CCGAAGCGCTGCCGGT-GCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 | || ||||| || || ||| || || ||| | || || || | |||| |||||||| Sbjct 11391 CAGATGCGCTCCCAGTCGCG-CTTCTCGGAATGAA-CGCCAAGCTCATGTGCCAATACAT 11334 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA---CTACAACAC 117396 ||||||||||| || | || || | ||| | ||| |||| | ||||||| | Sbjct 11333 TGAGTTCGTCGCTGATCGCCTCCTCGT--TGCT-TTGGGCAACAAGAAAGTCTACAACTC 11277 Query 117397 GCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 ||||||| | ||||| ||| | ||||||| ||| Sbjct 11276 CACCAACCCATTTGACTTCATGGATAACATCTCCCTGG 11239 >seq819 Length=4427 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || || || |||||||| || || | || |||||| | | Sbjct 1808 ATGCAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAAAGCTCA 1867 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | || | |||| | | || |||||||| ||||| | ||||| Sbjct 1868 GATACCATCGACAACGTTAAAAGCAAAA-TCCAAGATAAAGAGGGTATCCCACCAGACCA 1926 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||||| |||| ||| || |||||||| || |||| || || ||| ||||||||| Sbjct 1927 GCAACGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTACAA 1986 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || || |||| || || || || | ||| | | ||||| Sbjct 1987 TATCCAAAAAGAATCCACACTTCACCTTGTCCTTCGCCTTCGTGGCGG 2034 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || |||||||||||||| | || ||||| | | Sbjct 2036 ATGCAGATCTTCGTGAAAACTCTGACTGGCAAAACCATCACACTGGAGGTCGAGAGCTCT 2095 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| || | |||| | | ||||| || || ||||| | || || Sbjct 2096 GACACAATTGACAACGTAAAAAGCAAAA-TCCAAGACAAGGAAGGGATCCCACCAGATCA 2154 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || || |||||||| || || | || || || |||||||| Sbjct 2155 GCAGCGACTTATCTTTGCTGGTAAACAGCTAGAAGATGGTCGAACGCTTTCGGACTACAA 2214 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| ||| || ||| | |||||| | ||| |||| ||| Sbjct 2215 CATTCAGAAGGAGAGCACTCTCCATTTGGTGTTGAGATTGCGGGGTGGC 2263 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 ||||||| ||||| ||||| ||||| | ||||| || || || |||| ||| ||||| Sbjct 1330 AAAATTCAAGACAAGGAGGGTATCCCTCCTGACCAACAGCGCCTTATCTTCGCCGGCAAG 1389 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| || ||||| ||| ||||| |||||||||||| | || || || Sbjct 1390 CAGCTTGAGGACGGTCGTACCCTGTCCGATTACAATATCCAGAAGGAGTCTACCCTCCA 1448 >seq1424 Length=24560 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| |||||||| | || ||||| ||| ||||| | | Sbjct 23629 TTCGTCAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGACACCATC 23688 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| ||||| | || || ||||| ||||| | |||||||| ||| | Sbjct 23689 GACAATGTCAAGAGTAAAATCCAGGATAAGGAGGGTATCCCACCCGACCAGCAGCGATTG 23748 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||||||||| || || | || || || | ||| || |||||||| ||| Sbjct 23749 ATCTTCGCCGGCAAACAGCTTGAGGATGGCCGGACGCTTAGCGATTATAACATCCAAAAG 23808 Query 40879 G 40879 | Sbjct 23809 G 23809 >seq1691 Length=23441 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| | ||||||||||| | |||| ||| ||||||||||| || Sbjct 9107 GACAAGGAGGGCATTCCCCCCGACCAGCAACGCTTGATCTTCGCTGGCAAACAGCTTGAG 9048 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| || ||||| |||||||||||||| ||||| | || || || || ||| || Sbjct 9047 GACGGCCGTACCCTTTCTGACTACAACATCCAAAAGGAATCGACCCTTCACCTCGTGCTG 8988 Query 40903 CG 40904 || Sbjct 8987 CG 8986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515190579573440