Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq819 107 3e-18 >seq819 Length=4427 Score = 107 bits (118), Expect = 3e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 ||||| || || ||||||| || || ||||||||||| ||| | || | ||| || | Sbjct 1808 ATGCAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAAAGCTCA 1867 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || | ||| ||||| ||||||||||| ||||| ||||| || || Sbjct 1868 -GATACCATCGACAACGTTAAAAGCAAAATCCAAGATAAAGAGGGTATCCCACCAGACCA 1926 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | ||||| || ||||||||||| | ||||| | ||||| | || || || Sbjct 1927 GCAACGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTACAA 1986 Query 124718 TATTCAAAAAGAATCAAC 124735 ||| ||||||||||| || Sbjct 1987 TATCCAAAAAGAATCCAC 2004 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| || ||||||||||| || || || ||||| ||| | || || || || ||||| Sbjct 1664 AAAATCCAGGATAAAGAAGGGATCCCCCCGGATCAGCAACGTCTGATCTTCGCTGGAAAG 1723 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | || ||| | || || || |||||||| || |||||||||||||| | ||| Sbjct 1724 CAGCTCGAAGATGGCCGCACCTTGTCGGATTATAACATCCAAAAAGAATCAACGCTCCAT 1783 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 | || | ||| | || |||||||| Sbjct 1784 CTTGTCCTTCGTCTCCGTGGTGGTAT 1809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755414034419200