Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq819 107 3e-18
>seq819
Length=4427
Score = 107 bits (118), Expect = 3e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597
||||| || || ||||||| || || ||||||||||| ||| | || | ||| || |
Sbjct 1808 ATGCAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAAAGCTCA 1867
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| || || | ||| ||||| ||||||||||| ||||| ||||| || ||
Sbjct 1868 -GATACCATCGACAACGTTAAAAGCAAAATCCAAGATAAAGAGGGTATCCCACCAGACCA 1926
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | ||||| || ||||||||||| | ||||| | ||||| | || || ||
Sbjct 1927 GCAACGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTACAA 1986
Query 124718 TATTCAAAAAGAATCAAC 124735
||| ||||||||||| ||
Sbjct 1987 TATCCAAAAAGAATCCAC 2004
Score = 87.8 bits (96), Expect = 3e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682
||||| || ||||||||||| || || || ||||| ||| | || || || || |||||
Sbjct 1664 AAAATCCAGGATAAAGAAGGGATCCCCCCGGATCAGCAACGTCTGATCTTCGCTGGAAAG 1723
Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742
|| | || ||| | || || || |||||||| || |||||||||||||| | |||
Sbjct 1724 CAGCTCGAAGATGGCCGCACCTTGTCGGATTATAACATCCAAAAAGAATCAACGCTCCAT 1783
Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768
| || | ||| | || ||||||||
Sbjct 1784 CTTGTCCTTCGTCTCCGTGGTGGTAT 1809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755414034419200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |