Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq819 114 1e-20
seq1424 95.1 1e-14
>seq819
Length=4427
Score = 114 bits (126), Expect = 1e-20
Identities = 158/217 (73%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030
|||||||||||| | ||||||||||| ||||| ||||| || | || || || | ||
Sbjct 2248 CAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCATC 2189
Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090
|||||||| |||||||| || || ||||||||||| || | || | | ||||||||
Sbjct 2188 TTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTTGTC 2129
Query 43091 CATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGA 43146
|||||| ||| | ||| | | | ||||| |||| || || || | ||||
Sbjct 2128 TTGGATTTTGCTTTTTA-CGTTGTCAATTGTGTCAGAGCTC---TCGACCTCCAGTGTGA 2073
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||||||||| || || || || || ||||| |||||
Sbjct 2072 TGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
Score = 82.4 bits (90), Expect = 9e-11
Identities = 144/207 (70%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
|||||| | | ||| | ||||| || | || |||||| || ||||||||||| |
Sbjct 1473 TCCTCCACGGAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGA 1414
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
||| || || |||| || |||||||| || ||||| || || ||||| ||||| | ||
Sbjct 1413 CAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGG 1354
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGA---GCGTCGCCACCGTGTCGCTCGATTC 43132
| | |||||||| | ||| |||| | | | |||||| | || || | || ||
Sbjct 1353 GATACCCTCCTTGT-CTTGAATTTTGGACTTAACCGCGTCG--ATAGTATCACCTGACTC 1297
Query 43133 CACATCGACCGTGATGGTTTTGCCCGT 43159
|| |||| |||||||| || || ||
Sbjct 1296 AACGTCGAGTGTGATGGTCTTCCCGGT 1270
>seq1424
Length=24560
Score = 95.1 bits (104), Expect = 1e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
||||||| || || ||||| || ||||| | || || ||||| || || ||||| |
Sbjct 23809 CCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGA 23750
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| | |||||||||||||| || | | |||||| ||| |||||| |||| |
Sbjct 23749 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGT 23690
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | |||||||| || || || || | |||||||| |||||||| || ||||| || |
Sbjct 23689 CGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 23630
Query 43174 AG 43175
||
Sbjct 23629 AG 23628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571785835532320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |