Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq819 114 1e-20 seq1424 95.1 1e-14 >seq819 Length=4427 Score = 114 bits (126), Expect = 1e-20 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||||||||| | ||||||||||| ||||| ||||| || | || || || | || Sbjct 2248 CAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCATC 2189 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 |||||||| |||||||| || || ||||||||||| || | || | | |||||||| Sbjct 2188 TTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTTGTC 2129 Query 43091 CATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGA 43146 |||||| ||| | ||| | | | ||||| |||| || || || | |||| Sbjct 2128 TTGGATTTTGCTTTTTA-CGTTGTCAATTGTGTCAGAGCTC---TCGACCTCCAGTGTGA 2073 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||||| || || || || || ||||| ||||| Sbjct 2072 TGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 Score = 82.4 bits (90), Expect = 9e-11 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | ||||| || | || |||||| || ||||||||||| | Sbjct 1473 TCCTCCACGGAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGA 1414 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || || |||| || |||||||| || ||||| || || ||||| ||||| | || Sbjct 1413 CAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGG 1354 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGA---GCGTCGCCACCGTGTCGCTCGATTC 43132 | | |||||||| | ||| |||| | | | |||||| | || || | || || Sbjct 1353 GATACCCTCCTTGT-CTTGAATTTTGGACTTAACCGCGTCG--ATAGTATCACCTGACTC 1297 Query 43133 CACATCGACCGTGATGGTTTTGCCCGT 43159 || |||| |||||||| || || || Sbjct 1296 AACGTCGAGTGTGATGGTCTTCCCGGT 1270 >seq1424 Length=24560 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 ||||||| || || ||||| || ||||| | || || ||||| || || ||||| | Sbjct 23809 CCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGA 23750 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||||| || | | |||||| ||| |||||| |||| | Sbjct 23749 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGT 23690 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 23689 CGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 23630 Query 43174 AG 43175 || Sbjct 23629 AG 23628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571785835532320