Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq819 100 2e-16 seq1691 84.2 1e-11 >seq819 Length=4427 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||| |||| ||||| || | ||| || || ||||| ||||||||||| || Sbjct 2262 CCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 2203 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| || | || || | ||| || || || || || || |||||||| || | ||| Sbjct 2202 AGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGG 2143 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGA--TCGGCTATCGAATCGGTCGATTCG 34339 | || |||||||| || |||||||| | | | | || | || | ||| Sbjct 2142 ATCCCT-TCCTTGTCTTGGAT--TTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCG 2086 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct 2085 ACCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | || |||||| || || ||||||||||| Sbjct 2034 CCGCCACGAAGGCGAAGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAG 1975 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||| || |||||||| || || || |||||||| || Sbjct 1974 AGAGTTCGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGG 1915 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT--AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||| || || | ||||||||| | | | | || | ||| | ||||| Sbjct 1914 ATACCCTCTTTATC--TTGGATTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGA 1857 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | || || ||||||||||| || || || || ||||||||||| Sbjct 1856 CTTCAAGAGTAATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808 >seq1691 Length=23441 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||| ||||| | || ||| || || ||||||||||| || Sbjct 8974 CCACCACGCAGACGCAGCACGAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAA 9033 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | ||| ||||| ||||| || | || ||||||||| ||| Sbjct 9034 AGGGTACGGCCGTCCTCAAGCTGTTTGCCAGCGAAGATCAAGCGTTGCTGGTCGGGGGGA 9093 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 9094 ATGCCCTCCTTGTC 9107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323054502016640