Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq134 224 9e-54 seq302 105 6e-18 seq819 84.2 2e-11 >seq134 Length=7744 Score = 224 bits (248), Expect = 9e-54 Identities = 493/735 (67%), Gaps = 8/735 (1%) Strand=Plus/Minus Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTG 23307 ||||||| ||| | || ||||| |||||||| || ||| || |||| ||| |||| || Sbjct 5179 TACTTTTCGTAAAGAGCCTCAAACTCGGCACCATAGACA-TCCGCCAAGCCTGGCGCTTC 5121 Query 23308 CATCGGACACATGAGACTCCACATTGAGTCATTTT---CAACGCGTCTCATAAAAAGATC 23364 | || || | |||| |||| | | |||||| |||| || ||||||| ||||| Sbjct 5120 ATTGGGGCAAAAGAGAGTCCA---TTCGCCATTTTTCTCAACACGCTTCATAAAGAGATC 5064 Query 23365 CGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTT 23424 ||| |||| ||||| ||| || || || || || || || || || ||| |||||| Sbjct 5063 AGGTGTCCAAAGAGCTAGGAAAAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTT 5004 Query 23425 TTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGC 23484 | ||||| || || || | || | |||||||| ||||| |||| || || || Sbjct 5003 ACGGAGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGC 4944 Query 23485 GCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAG 23544 ||||| | ||||| || ||||| ||||| || | || ||||||||| | || | || Sbjct 4943 TCCCGGCCGTTTATTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAG 4884 Query 23545 CATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCG 23604 ||| || |||| ||||| || | || | || || | || || | | || Sbjct 4883 CATTGGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACG 4824 Query 23605 AACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTT 23664 || | ||||| || || ||| || || || | | || || |||| || || || Sbjct 4823 AATGCGGTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTT 4764 Query 23665 CAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGA 23724 || |||||||| || ||||| || |||||||| || | ||| | ||| ||||||| Sbjct 4763 CAACGTGTCGTAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGC 4704 Query 23725 CATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCC 23784 ||| || | || || ||| |||| ||| || || || || ||||| ||| || Sbjct 4703 CATCTGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTT 4644 Query 23785 ATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGAT 23844 | ||||| || || || || |||||| | || | || ||||| || || |||| Sbjct 4643 TTGAGACATGAGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGAC 4584 Query 23845 GGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAG 23904 || || ||||| ||||||| |||||| | || | |||||| ||| | || Sbjct 4583 AGCAACACGCATGATCATGTGTTGAGGGCGTTCAGCAACTTTGCCGTTGATTCGAAGCAA 4524 Query 23905 ATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCAC 23964 ||| || || | | || || ||||| || || | ||| || ||||||||||| | || Sbjct 4523 ATAAGACCGCTCTAGAGTCTTGAATCCGAAGTATTGATAATTGAAGTCACGATCATAGAC 4464 Query 23965 TATGGCCGAATTCAA 23979 ||||| ||||| || Sbjct 4463 AATGGCAGAATTAAA 4449 >seq302 Length=30871 Score = 105 bits (116), Expect = 6e-18 Identities = 202/295 (68%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | ||||| || || ||||| || ||||| ||||| | |||||| | ||||| Sbjct 12095 ATCTGGCAAATGTATAAGAAAGCAGAGGCGTCGTTCTGGACTGCAGAAGAAATTGACCTC 12036 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||||| ||||||| | | | || || |||| | | || || | Sbjct 12035 TCAAAAGATCTTCACGATTGGAACAACAGATTGAACGATGATGAGCGGTACTTCATCTCA 11976 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||||||||| || |||||||| || ||||| ||||| ||||| || |||| | || Sbjct 11975 CACGTGTTGGCATTCTTCGCCGCGTCGGATGGCATTGTCAACGAAAACCTGGTTG--AGC 11918 Query 57747 TTTTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| || || || || | ||||| | ||||| ||||| || || | | Sbjct 11917 GTTTCAGCGGGGAGGTTCAGGTTCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGA 11858 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 | || ||| | || ||||| | || || || |||||||| || ||| | ||||| Sbjct 11857 TGGAGAACATTCACTCAGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGA 11803 Score = 102 bits (112), Expect = 7e-17 Identities = 341/524 (65%), Gaps = 20/524 (4%) Strand=Plus/Minus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGA 57970 |||||| || || ||| | ||| |||||| || | || || | || || || | Sbjct 11693 CAAGAAAGCTGATTGGGCCATCCGATGGATTGAA---GACAAGGAGTCTACCTTTGCGCA 11637 Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030 | | || |||| ||||| || || ||||| || ||||| || ||| || |||| Sbjct 11636 GCGTCTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGATCCTTCGCTTCAAT 11577 Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090 || ||| ||||||||||||| || ||||| || || |||||| |||||| | || || Sbjct 11576 CTTCTGGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTTCTAACGAGCTTATTTC 11517 Query 58091 GCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT-TGTCAATA 58149 || |||||||| | || ||||||||||| || || | | |||||| | ||| | Sbjct 11516 TCGTGACGAGGGCTTACACACTGATTTTGCCTGTCTCCTCTTTTCTCACTTGCGTC-ACC 11458 Query 58150 AACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGT 58209 || | | || || | || ||||| || || ||| | ||||| | |||| Sbjct 11457 GTCCTAGCCAAGAGGCTGTCGAGAGGATCATCACTGAAGCTGTCACTATCGAGCAGGAGT 11398 Query 58210 TTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGT 58269 | || | || || || || || || | ||||| |||||| | | |||| | | Sbjct 11397 TCCTCTCAGATGCGCTCCCAGTCGCGCTTCTCGGAATGAACGCCAAGCTCATGTGCCAAT 11338 Query 58270 ACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG------AGAGCGTCATT 58323 |||||||||| || || || | || | | | || |||| ||| ||| | Sbjct 11337 ACATTGAGTTCGTCGCTGATCGCCTCCTCGTTG--CT--TTGGGCAACAAGAAAGTC--T 11284 Query 58324 ACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACT 58383 ||||| | | || || ||||| || ||| || ||||| || | || || || |||| Sbjct 11283 ACAACTCCACCAACCCATTTGACTTCATGGATAACATCTCCCTGGCAGGTAAAACCAACT 11224 Query 58384 TTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 | ||||||||| ||| | || || || || ||| || ||| Sbjct 11223 TCTTCGAAAAACGTGTTGGTGACTACCAGAAGGCCGGTGTCATG 11180 >seq819 Length=4427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| || || |||||||| || || | || || ||| || Sbjct 1808 ATGCAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAAAGCTCA 1867 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || ||| | ||| || || || || | || || |||||| Sbjct 1868 GATACCATCGACAACGTTAAAAGCAAAATCCAAGATAAAGAGGGTATCCCACCAGACCAG 1927 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || ||||| || |||||| | || ||| ||| | ||| || || Sbjct 1928 CAACGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTACAAT 1987 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| || ||||| || || ||| | || | ||||||| Sbjct 1988 ATCCAAAAAGAATCCACACTTCACCTTGTCCTTCGCCTTCGTGGCGGTA 2036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445741637676480