Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq134 224 9e-54
seq302 105 6e-18
seq819 84.2 2e-11
>seq134
Length=7744
Score = 224 bits (248), Expect = 9e-54
Identities = 493/735 (67%), Gaps = 8/735 (1%)
Strand=Plus/Minus
Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTG 23307
||||||| ||| | || ||||| |||||||| || ||| || |||| ||| |||| ||
Sbjct 5179 TACTTTTCGTAAAGAGCCTCAAACTCGGCACCATAGACA-TCCGCCAAGCCTGGCGCTTC 5121
Query 23308 CATCGGACACATGAGACTCCACATTGAGTCATTTT---CAACGCGTCTCATAAAAAGATC 23364
| || || | |||| |||| | | |||||| |||| || ||||||| |||||
Sbjct 5120 ATTGGGGCAAAAGAGAGTCCA---TTCGCCATTTTTCTCAACACGCTTCATAAAGAGATC 5064
Query 23365 CGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTT 23424
||| |||| ||||| ||| || || || || || || || || || ||| ||||||
Sbjct 5063 AGGTGTCCAAAGAGCTAGGAAAAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTT 5004
Query 23425 TTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGC 23484
| ||||| || || || | || | |||||||| ||||| |||| || || ||
Sbjct 5003 ACGGAGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGC 4944
Query 23485 GCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAG 23544
||||| | ||||| || ||||| ||||| || | || ||||||||| | || | ||
Sbjct 4943 TCCCGGCCGTTTATTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAG 4884
Query 23545 CATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCG 23604
||| || |||| ||||| || | || | || || | || || | | ||
Sbjct 4883 CATTGGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACG 4824
Query 23605 AACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTT 23664
|| | ||||| || || ||| || || || | | || || |||| || || ||
Sbjct 4823 AATGCGGTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTT 4764
Query 23665 CAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGA 23724
|| |||||||| || ||||| || |||||||| || | ||| | ||| |||||||
Sbjct 4763 CAACGTGTCGTAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGC 4704
Query 23725 CATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCC 23784
||| || | || || ||| |||| ||| || || || || ||||| ||| ||
Sbjct 4703 CATCTGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTT 4644
Query 23785 ATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGAT 23844
| ||||| || || || || |||||| | || | || ||||| || || ||||
Sbjct 4643 TTGAGACATGAGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGAC 4584
Query 23845 GGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAG 23904
|| || ||||| ||||||| |||||| | || | |||||| ||| | ||
Sbjct 4583 AGCAACACGCATGATCATGTGTTGAGGGCGTTCAGCAACTTTGCCGTTGATTCGAAGCAA 4524
Query 23905 ATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCAC 23964
||| || || | | || || ||||| || || | ||| || ||||||||||| | ||
Sbjct 4523 ATAAGACCGCTCTAGAGTCTTGAATCCGAAGTATTGATAATTGAAGTCACGATCATAGAC 4464
Query 23965 TATGGCCGAATTCAA 23979
||||| ||||| ||
Sbjct 4463 AATGGCAGAATTAAA 4449
>seq302
Length=30871
Score = 105 bits (116), Expect = 6e-18
Identities = 202/295 (68%), Gaps = 7/295 (2%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | ||||| || || ||||| || ||||| ||||| | |||||| | |||||
Sbjct 12095 ATCTGGCAAATGTATAAGAAAGCAGAGGCGTCGTTCTGGACTGCAGAAGAAATTGACCTC 12036
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| || ||||| ||||||| | | | || || |||| | | || || |
Sbjct 12035 TCAAAAGATCTTCACGATTGGAACAACAGATTGAACGATGATGAGCGGTACTTCATCTCA 11976
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||||||||| || |||||||| || ||||| ||||| ||||| || |||| | ||
Sbjct 11975 CACGTGTTGGCATTCTTCGCCGCGTCGGATGGCATTGTCAACGAAAACCTGGTTG--AGC 11918
Query 57747 TTTTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804
||||| || || || || | ||||| | ||||| ||||| || || | |
Sbjct 11917 GTTTCAGCGGGGAGGTTCAGGTTCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGA 11858
Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
| || ||| | || ||||| | || || || |||||||| || ||| | |||||
Sbjct 11857 TGGAGAACATTCACTCAGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGA 11803
Score = 102 bits (112), Expect = 7e-17
Identities = 341/524 (65%), Gaps = 20/524 (4%)
Strand=Plus/Minus
Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGA 57970
|||||| || || ||| | ||| |||||| || | || || | || || || |
Sbjct 11693 CAAGAAAGCTGATTGGGCCATCCGATGGATTGAA---GACAAGGAGTCTACCTTTGCGCA 11637
Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030
| | || |||| ||||| || || ||||| || ||||| || ||| || ||||
Sbjct 11636 GCGTCTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGATCCTTCGCTTCAAT 11577
Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090
|| ||| ||||||||||||| || ||||| || || |||||| |||||| | || ||
Sbjct 11576 CTTCTGGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTTCTAACGAGCTTATTTC 11517
Query 58091 GCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT-TGTCAATA 58149
|| |||||||| | || ||||||||||| || || | | |||||| | ||| |
Sbjct 11516 TCGTGACGAGGGCTTACACACTGATTTTGCCTGTCTCCTCTTTTCTCACTTGCGTC-ACC 11458
Query 58150 AACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGT 58209
|| | | || || | || ||||| || || ||| | ||||| | ||||
Sbjct 11457 GTCCTAGCCAAGAGGCTGTCGAGAGGATCATCACTGAAGCTGTCACTATCGAGCAGGAGT 11398
Query 58210 TTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGT 58269
| || | || || || || || || | ||||| |||||| | | |||| | |
Sbjct 11397 TCCTCTCAGATGCGCTCCCAGTCGCGCTTCTCGGAATGAACGCCAAGCTCATGTGCCAAT 11338
Query 58270 ACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG------AGAGCGTCATT 58323
|||||||||| || || || | || | | | || |||| ||| ||| |
Sbjct 11337 ACATTGAGTTCGTCGCTGATCGCCTCCTCGTTG--CT--TTGGGCAACAAGAAAGTC--T 11284
Query 58324 ACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACT 58383
||||| | | || || ||||| || ||| || ||||| || | || || || ||||
Sbjct 11283 ACAACTCCACCAACCCATTTGACTTCATGGATAACATCTCCCTGGCAGGTAAAACCAACT 11224
Query 58384 TTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427
| ||||||||| ||| | || || || || ||| || |||
Sbjct 11223 TCTTCGAAAAACGTGTTGGTGACTACCAGAAGGCCGGTGTCATG 11180
>seq819
Length=4427
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||||||||| || || |||||||| || || | || || ||| ||
Sbjct 1808 ATGCAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAAAGCTCA 1867
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | || ||| | ||| || || || || | || || ||||||
Sbjct 1868 GATACCATCGACAACGTTAAAAGCAAAATCCAAGATAAAGAGGGTATCCCACCAGACCAG 1927
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| || || || ||||| || |||||| | || ||| ||| | ||| || ||
Sbjct 1928 CAACGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTACAAT 1987
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||||||||| || ||||| || || ||| | || | |||||||
Sbjct 1988 ATCCAAAAAGAATCCACACTTCACCTTGTCCTTCGCCTTCGTGGCGGTA 2036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445741637676480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |