Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq134 199 5e-46 >seq134 Length=7744 Score = 199 bits (220), Expect = 5e-46 Identities = 580/893 (65%), Gaps = 0/893 (0%) Strand=Plus/Minus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || |||||| | || | |||| |||| || || ||||| || || | | | | Sbjct 5161 TCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCATTGGGGCAAAAGAGAGTC 5102 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 || || || | | || || || ||||||||||||||||| |||||||||||| || Sbjct 5101 CATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAAA 5042 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 | ||| | | | | ||| || ||||| ||||| || || | ||| | | | Sbjct 5041 AGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAAA 4982 Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221 |||||| ||||||||||| | || || || | | |||| |||||||| || |||||| Sbjct 4981 ATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCCC 4922 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 || || | |||||||| ||||| || |||| | || |||||||| || || || || Sbjct 4921 TGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGAG 4862 Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCT 66341 | ||||| || |||| || || || | ||||||| ||| ||||| Sbjct 4861 GATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACCA 4802 Query 66342 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 66401 || || || || | || || || || || || || ||||| || || || ||||| Sbjct 4801 ATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCA 4742 Query 66402 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 66461 ||||| || ||| |||||| | || || || || ||| || | | || || Sbjct 4741 ATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCG 4682 Query 66462 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 66521 ||||| || | |||||||||||| ||||| || |||||| ||| | || || || || Sbjct 4681 GCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGTT 4622 Query 66522 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 66581 || || | |||| ||| | ||||||||| || || |||||||| | |||||| Sbjct 4621 TCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTGT 4562 Query 66582 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 66641 ||||| | |||| | | ||| ||| ||| | ||| || || || | ||| || Sbjct 4561 TGAGGGCGTTCAGCAACTTTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTTG 4502 Query 66642 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCC 66701 || || || || | || ||||| || || || | ||| | || || | || |||| Sbjct 4501 AATCCGAAGTATTGATAATTGAAGTCACGATCATAGACAATGGCAGAATTAAATTCATCC 4442 Query 66702 TTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTT 66761 || | ||| || ||| || || || || | | || ||| Sbjct 4441 GCATGCCGCATCACTGTTTCGTACGTAGCCTGCGATATCATTGGGGCAGGTCGTTGATTC 4382 Query 66762 TTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCT 66821 || || |||| ||| | | | | || || ||||| | |||| ||||||| |||| Sbjct 4381 TTCGGGTTGATATAATGGTAGAGGTCATCTATCACCGAAGAAAATTGTTTTTTAGTTTGC 4322 Query 66822 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATG 66874 ||||| ||||| ||||| ||||| | || |||| || || || || || || Sbjct 4321 TTGTGGAGATTGGATACAGCTATCCGGGCAGCTAGGATTGCGTAGTCTGGGTG 4269 Score = 98.7 bits (108), Expect = 1e-15 Identities = 193/285 (68%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 64832 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 64891 ||||| || || ||||| ||||| ||||| | | ||||| |||||||||||||| || Sbjct 6390 GTCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGT 6331 Query 64892 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 64951 ||| ||||| || |||| || |||||||| || || | |||| |||| || Sbjct 6330 TTTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTGCCCATGGTCGGCTC 6271 Query 64952 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 65011 | ||||||||| | ||| || ||| ||||| || || || | || |||||||| Sbjct 6270 CTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAGCCAT 6211 Query 65012 TTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTC 65071 | | || || || | |||||||| | || ||||| | || ||||| | Sbjct 6210 CTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATATCCTG 6151 Query 65072 TGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 65113 ||| | ||| | | |||||||| || || || || || ||||| Sbjct 6150 TGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAAT 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658136238500960