Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq134 199 5e-46
>seq134
Length=7744
Score = 199 bits (220), Expect = 5e-46
Identities = 580/893 (65%), Gaps = 0/893 (0%)
Strand=Plus/Minus
Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041
|| |||||| | || | |||| |||| || || ||||| || || | | | |
Sbjct 5161 TCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCATTGGGGCAAAAGAGAGTC 5102
Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101
|| || || | | || || || ||||||||||||||||| |||||||||||| ||
Sbjct 5101 CATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAAA 5042
Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161
| ||| | | | | ||| || ||||| ||||| || || | ||| | | |
Sbjct 5041 AGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAAA 4982
Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221
|||||| ||||||||||| | || || || | | |||| |||||||| || ||||||
Sbjct 4981 ATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCCC 4922
Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281
|| || | |||||||| ||||| || |||| | || |||||||| || || || ||
Sbjct 4921 TGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGAG 4862
Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCT 66341
| ||||| || |||| || || || | ||||||| ||| |||||
Sbjct 4861 GATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACCA 4802
Query 66342 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 66401
|| || || || | || || || || || || || ||||| || || || |||||
Sbjct 4801 ATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCA 4742
Query 66402 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 66461
||||| || ||| |||||| | || || || || ||| || | | || ||
Sbjct 4741 ATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCG 4682
Query 66462 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 66521
||||| || | |||||||||||| ||||| || |||||| ||| | || || || ||
Sbjct 4681 GCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGTT 4622
Query 66522 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 66581
|| || | |||| ||| | ||||||||| || || |||||||| | ||||||
Sbjct 4621 TCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTGT 4562
Query 66582 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 66641
||||| | |||| | | ||| ||| ||| | ||| || || || | ||| ||
Sbjct 4561 TGAGGGCGTTCAGCAACTTTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTTG 4502
Query 66642 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCC 66701
|| || || || | || ||||| || || || | ||| | || || | || ||||
Sbjct 4501 AATCCGAAGTATTGATAATTGAAGTCACGATCATAGACAATGGCAGAATTAAATTCATCC 4442
Query 66702 TTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTT 66761
|| | ||| || ||| || || || || | | || |||
Sbjct 4441 GCATGCCGCATCACTGTTTCGTACGTAGCCTGCGATATCATTGGGGCAGGTCGTTGATTC 4382
Query 66762 TTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCT 66821
|| || |||| ||| | | | | || || ||||| | |||| ||||||| ||||
Sbjct 4381 TTCGGGTTGATATAATGGTAGAGGTCATCTATCACCGAAGAAAATTGTTTTTTAGTTTGC 4322
Query 66822 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATG 66874
||||| ||||| ||||| ||||| | || |||| || || || || || ||
Sbjct 4321 TTGTGGAGATTGGATACAGCTATCCGGGCAGCTAGGATTGCGTAGTCTGGGTG 4269
Score = 98.7 bits (108), Expect = 1e-15
Identities = 193/285 (68%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 64832 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 64891
||||| || || ||||| ||||| ||||| | | ||||| |||||||||||||| ||
Sbjct 6390 GTCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGT 6331
Query 64892 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 64951
||| ||||| || |||| || |||||||| || || | |||| |||| ||
Sbjct 6330 TTTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTGCCCATGGTCGGCTC 6271
Query 64952 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 65011
| ||||||||| | ||| || ||| ||||| || || || | || ||||||||
Sbjct 6270 CTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAGCCAT 6211
Query 65012 TTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTC 65071
| | || || || | |||||||| | || ||||| | || ||||| |
Sbjct 6210 CTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATATCCTG 6151
Query 65072 TGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 65113
||| | ||| | | |||||||| || || || || || |||||
Sbjct 6150 TGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAAT 6106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658136238500960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |