Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq302 109 4e-19
>seq302
Length=30871
Score = 109 bits (120), Expect = 4e-19
Identities = 291/442 (66%), Gaps = 2/442 (0%)
Strand=Plus/Minus
Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800
||||| | ||||| || |||||||||||| || | || || || || || | ||
Sbjct 11635 CGTCTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGATCCTTCGCTTCAATC 11576
Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860
||||||||||||||||| || ||||| || | ||||||| |||||| | |||
Sbjct 11575 TTCTGGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTTCTAACGAGCTTATTTCT 11516
Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAA 22920
|||||||| || ||||| ||| ||||| ||| | || ||| || || ||
Sbjct 11515 CGTGACGAGGGCTTACACACTGATTTTGCCTGTCTCCTCTTTTCTCACTTGCGTCACCGT 11456
Query 22921 CCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTTC 22980
|| | || || | || | ||||| |||| || || || ||| || |||
Sbjct 11455 CCTAGCCAAGAGGCTGTCGAGAGGATCATCACTGAAGCTGTCACTATCGAGCAGGAGTTC 11396
Query 22981 TTCCAAGAGGCACT-AAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTA 23039
|| ||| || || || | | || || || ||||| | ||| | | ||
Sbjct 11395 CTCTCAGATGCGCTCCCAGTC-GCGCTTCTCGGAATGAACGCCAAGCTCATGTGCCAATA 11337
Query 23040 CATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGT 23099
||| |||| || || |||||||| |||| ||| |||| | || | || |||
Sbjct 11336 CATTGAGTTCGTCGCTGATCGCCTCCTCGTTGCTTTGGGCAACAAGAAAGTCTACAACTC 11277
Query 23100 TGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159
|||| |||||||| |||||||||||||| | | | ||||||||| |||||||| ||
Sbjct 11276 CACCAACCCATTTGACTTCATGGATAACATCTCCCTGGCAGGTAAAACCAACTTCTTCGA 11217
Query 23160 ACGCCGTGTGAGTGAATATCAG 23181
| ||||| |||| || |||
Sbjct 11216 AAAACGTGTTGGTGACTACCAG 11195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356214305942932
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |