Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq302 109 4e-19 >seq302 Length=30871 Score = 109 bits (120), Expect = 4e-19 Identities = 291/442 (66%), Gaps = 2/442 (0%) Strand=Plus/Minus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 ||||| | ||||| || |||||||||||| || | || || || || || | || Sbjct 11635 CGTCTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGATCCTTCGCTTCAATC 11576 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 ||||||||||||||||| || ||||| || | ||||||| |||||| | ||| Sbjct 11575 TTCTGGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTTCTAACGAGCTTATTTCT 11516 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAA 22920 |||||||| || ||||| ||| ||||| ||| | || ||| || || || Sbjct 11515 CGTGACGAGGGCTTACACACTGATTTTGCCTGTCTCCTCTTTTCTCACTTGCGTCACCGT 11456 Query 22921 CCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTTC 22980 || | || || | || | ||||| |||| || || || ||| || ||| Sbjct 11455 CCTAGCCAAGAGGCTGTCGAGAGGATCATCACTGAAGCTGTCACTATCGAGCAGGAGTTC 11396 Query 22981 TTCCAAGAGGCACT-AAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTA 23039 || ||| || || || | | || || || ||||| | ||| | | || Sbjct 11395 CTCTCAGATGCGCTCCCAGTC-GCGCTTCTCGGAATGAACGCCAAGCTCATGTGCCAATA 11337 Query 23040 CATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGT 23099 ||| |||| || || |||||||| |||| ||| |||| | || | || ||| Sbjct 11336 CATTGAGTTCGTCGCTGATCGCCTCCTCGTTGCTTTGGGCAACAAGAAAGTCTACAACTC 11277 Query 23100 TGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 |||| |||||||| |||||||||||||| | | | ||||||||| |||||||| || Sbjct 11276 CACCAACCCATTTGACTTCATGGATAACATCTCCCTGGCAGGTAAAACCAACTTCTTCGA 11217 Query 23160 ACGCCGTGTGAGTGAATATCAG 23181 | ||||| |||| || ||| Sbjct 11216 AAAACGTGTTGGTGACTACCAG 11195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356214305942932