Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq819 104 2e-17
>seq819
Length=4427
Score = 104 bits (114), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || || || | ||| || || || | || ||| || |||||||| || ||
Sbjct 2265 TGGCCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCC 2206
Query 139595 CTCATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 139652
| || |||| ||||| ||||||||||||||| |||| || || |||||||| |
Sbjct 2205 GAAAGCGT--TCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTG 2148
Query 139653 GAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712
| || || ||||| ||||| |||||| ||||| | || | |||||| | | ||
Sbjct 2147 GTGGGATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCT 2088
Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
| ||||| | || | || ||||| |||| ||||| ||||| || ||||||
Sbjct 2087 CGACCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCATA 2035
Score = 96.9 bits (106), Expect = 3e-15
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626
||| || |||||||| ||||||||||| || |||| ||||||||||| || ||
Sbjct 1777 CGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATCTTCGAGCTGCTTTCC 1718
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
||| ||||||||||||||||||| || || || |||||||| || |||||| ||
Sbjct 1717 AGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATCCTGGATTTTGCTCTT 1658
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | || || | | |||||||| | ||| | |||||||| || | ||
Sbjct 1657 CACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 1598
Query 139747 TTTTAC 139752
||| ||
Sbjct 1597 TTTCAC 1592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496036443644800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |