Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq134 214 3e-50 >seq134 Length=7744 Score = 214 bits (236), Expect = 3e-50 Identities = 550/835 (66%), Gaps = 2/835 (0%) Strand=Plus/Minus Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||| || |||| | || || || ||||||||||||||||| |||||||||||| || Sbjct 5102 CCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAA 5043 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| | | | | || || ||||| ||||| || || | ||| | | Sbjct 5042 AAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAA 4983 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 |||||||| ||||||||||| | || || || | | ||||||| ||||| || ||||| Sbjct 4982 AATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCC 4923 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 ||| || | |||||||| ||||| || |||| | || |||||||| || || || || Sbjct 4922 CTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGA 4863 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 80219 | ||||| || |||| || || || || ||||||| ||| ||||| Sbjct 4862 GGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACC 4803 Query 80220 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 80279 || || || || | || || || || || || || ||||| || || || ||||| Sbjct 4802 AATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTC 4743 Query 80280 TATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 80339 || || || || |||||| | || || || || ||| || | | || || Sbjct 4742 AATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACC 4683 Query 80340 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 80399 ||||| || | |||||||||||| ||||| || |||||| ||||| || || || || Sbjct 4682 GGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGT 4623 Query 80400 CTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459 || || | |||| ||| | ||||||||| || || |||||||| | |||||| Sbjct 4622 TTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTG 4563 Query 80460 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTT 80519 ||||| | |||| | | ||| || ||| | ||| ||||| || | ||| || Sbjct 4562 TTGAGGGCGTTCAGCAACTTTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTT 4503 Query 80520 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 80579 || || || || | || ||||| || || || | ||| | || || | || ||| Sbjct 4502 GAATCCGAAGTATTGATAATTGAAGTCACGATCATAGACAATGGCAGAATTAAATTCATC 4443 Query 80580 CTTATATTTGTTAACTACATCCATGGTGATACT-TGAAATAATCGGAGAATGTTTCCCAT 80638 | || | ||| || || | || || || || || | | || || Sbjct 4442 CGCATGCCGCATCACTGTTTCGTACGT-AGCCTGCGATATCATTGGGGCAGGTCGTTGAT 4384 Query 80639 TTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTT 80698 | || || || | ||| | | | | || || ||||| | |||| ||||||| |||| Sbjct 4383 TCTTCGGGTTGATATAATGGTAGAGGTCATCTATCACCGAAGAAAATTGTTTTTTAGTTT 4324 Query 80699 CCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 |||||| ||||| ||||| ||||| | ||| |||| || || || ||||| || Sbjct 4323 GCTTGTGGAGATTGGATACAGCTATCCGGGCAGCTAGGATTGCGTAGTCTGGGTG 4269 Score = 122 bits (134), Expect = 1e-22 Identities = 377/578 (65%), Gaps = 19/578 (3%) Strand=Plus/Minus Query 78711 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 78770 ||||| || || ||||| ||||| ||||| | | ||||| |||||||||||||| || Sbjct 6390 GTCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGT 6331 Query 78771 TTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 78830 ||| ||||| || |||| || ||||||||| || || | |||| |||| || Sbjct 6330 TTTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTGCCCATGGTCGGCTC 6271 Query 78831 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 78890 | ||||||||| | ||| || ||| ||||| || || || | || |||||||| Sbjct 6270 CTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAGCCAT 6211 Query 78891 TTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTC 78950 | | || || || | |||||||| | || ||||| | || ||||| | Sbjct 6210 CTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATATCCTG 6151 Query 78951 TGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTC 79007 ||| | ||| | | |||||||| || || || || || ||||| | || || || | Sbjct 6150 TGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAATACGGTTTTTCATGTT 6091 Query 79008 TTCATTCCATA-----ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 || ||| | || | | | ||| | | ||||| |||||| || | | Sbjct 6090 GTCGGACCACAGACCCATGTCCACGAGGT-----CCTTCAGGAGCCACGGATTGACGATT 6036 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 || ||||| || | || || | || | ||| || ||| ||| ||||| || | || Sbjct 6035 TGGAATTCACCCGCCAGAACACGACGTGAGTAGATGTTAGAGGTGTATGGCTCAAAGCAT 5976 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGAT-GCCGTTGGCATAGGTGCCACCAATAAACT 79181 || || || | ||| || || | || | || || ||||| || || || | ||||| Sbjct 5975 TCGTTGAACCCAAGAATCTG-GCTGGTGCTGGCAGTCGGCATGGGCGCAACAAGCAAACT 5917 Query 79182 ATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239 ||| | | || ||| | | || | | ||| || || ||||||||||| || || Sbjct 5916 ATTACGCACTCC--ATGCTTAGCAATATCTTGTTTCAGCGAGTCCCAATCCCAGAGGTCG 5859 Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAATACC 79277 | ||| || ||||| | ||||||||| || ||||| Sbjct 5858 GTGGGGGTCACTTTCCACATATCATATTGAAGGATACC 5821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718228900168160