Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq134 214 3e-50
>seq134
Length=7744
Score = 214 bits (236), Expect = 3e-50
Identities = 550/835 (66%), Gaps = 2/835 (0%)
Strand=Plus/Minus
Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979
||| || |||| | || || || ||||||||||||||||| |||||||||||| ||
Sbjct 5102 CCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAA 5043
Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039
||||| | | | | || || ||||| ||||| || || | ||| | |
Sbjct 5042 AAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAA 4983
Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099
|||||||| ||||||||||| | || || || | | ||||||| ||||| || |||||
Sbjct 4982 AATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCC 4923
Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159
||| || | |||||||| ||||| || |||| | || |||||||| || || || ||
Sbjct 4922 CTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGA 4863
Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 80219
| ||||| || |||| || || || || ||||||| ||| |||||
Sbjct 4862 GGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACC 4803
Query 80220 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 80279
|| || || || | || || || || || || || ||||| || || || |||||
Sbjct 4802 AATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTC 4743
Query 80280 TATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 80339
|| || || || |||||| | || || || || ||| || | | || ||
Sbjct 4742 AATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACC 4683
Query 80340 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 80399
||||| || | |||||||||||| ||||| || |||||| ||||| || || || ||
Sbjct 4682 GGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGT 4623
Query 80400 CTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459
|| || | |||| ||| | ||||||||| || || |||||||| | ||||||
Sbjct 4622 TTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTG 4563
Query 80460 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTT 80519
||||| | |||| | | ||| || ||| | ||| ||||| || | ||| ||
Sbjct 4562 TTGAGGGCGTTCAGCAACTTTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTT 4503
Query 80520 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 80579
|| || || || | || ||||| || || || | ||| | || || | || |||
Sbjct 4502 GAATCCGAAGTATTGATAATTGAAGTCACGATCATAGACAATGGCAGAATTAAATTCATC 4443
Query 80580 CTTATATTTGTTAACTACATCCATGGTGATACT-TGAAATAATCGGAGAATGTTTCCCAT 80638
| || | ||| || || | || || || || || | | || ||
Sbjct 4442 CGCATGCCGCATCACTGTTTCGTACGT-AGCCTGCGATATCATTGGGGCAGGTCGTTGAT 4384
Query 80639 TTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTT 80698
| || || || | ||| | | | | || || ||||| | |||| ||||||| ||||
Sbjct 4383 TCTTCGGGTTGATATAATGGTAGAGGTCATCTATCACCGAAGAAAATTGTTTTTTAGTTT 4324
Query 80699 CCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753
|||||| ||||| ||||| ||||| | ||| |||| || || || ||||| ||
Sbjct 4323 GCTTGTGGAGATTGGATACAGCTATCCGGGCAGCTAGGATTGCGTAGTCTGGGTG 4269
Score = 122 bits (134), Expect = 1e-22
Identities = 377/578 (65%), Gaps = 19/578 (3%)
Strand=Plus/Minus
Query 78711 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 78770
||||| || || ||||| ||||| ||||| | | ||||| |||||||||||||| ||
Sbjct 6390 GTCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGT 6331
Query 78771 TTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 78830
||| ||||| || |||| || ||||||||| || || | |||| |||| ||
Sbjct 6330 TTTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTGCCCATGGTCGGCTC 6271
Query 78831 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 78890
| ||||||||| | ||| || ||| ||||| || || || | || ||||||||
Sbjct 6270 CTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAGCCAT 6211
Query 78891 TTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTC 78950
| | || || || | |||||||| | || ||||| | || ||||| |
Sbjct 6210 CTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATATCCTG 6151
Query 78951 TGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTC 79007
||| | ||| | | |||||||| || || || || || ||||| | || || || |
Sbjct 6150 TGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAATACGGTTTTTCATGTT 6091
Query 79008 TTCATTCCATA-----ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062
|| ||| | || | | | ||| | | ||||| |||||| || | |
Sbjct 6090 GTCGGACCACAGACCCATGTCCACGAGGT-----CCTTCAGGAGCCACGGATTGACGATT 6036
Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122
|| ||||| || | || || | || | ||| || ||| ||| ||||| || | ||
Sbjct 6035 TGGAATTCACCCGCCAGAACACGACGTGAGTAGATGTTAGAGGTGTATGGCTCAAAGCAT 5976
Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGAT-GCCGTTGGCATAGGTGCCACCAATAAACT 79181
|| || || | ||| || || | || | || || ||||| || || || | |||||
Sbjct 5975 TCGTTGAACCCAAGAATCTG-GCTGGTGCTGGCAGTCGGCATGGGCGCAACAAGCAAACT 5917
Query 79182 ATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239
||| | | || ||| | | || | | ||| || || ||||||||||| || ||
Sbjct 5916 ATTACGCACTCC--ATGCTTAGCAATATCTTGTTTCAGCGAGTCCCAATCCCAGAGGTCG 5859
Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAATACC 79277
| ||| || ||||| | ||||||||| || |||||
Sbjct 5858 GTGGGGGTCACTTTCCACATATCATATTGAAGGATACC 5821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718228900168160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |