Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq134 230 3e-55
>seq134
Length=7744
Score = 230 bits (254), Expect = 3e-55
Identities = 542/816 (66%), Gaps = 2/816 (0%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
|| || ||||||||||||||||| |||||||||||| || ||||| | | | |
Sbjct 5083 ACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAAAAGATCACGAGCCCGAACT 5024
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || ||||| ||||| || || | ||| | | |||||||| |||||||||
Sbjct 5023 TCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGT 4964
Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201
|| | || || || | | ||||||||||||| || |||||||| || | ||||||||
Sbjct 4963 TCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCCCTGGTCGACATATCTAGCA 4904
Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261
||||| || |||| | || |||||||| || || || || | ||||| || ||||
Sbjct 4903 GTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCA 4844
Query 72262 ATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTA 72321
|| || || || ||||||| | ||| ||||| || || || || | ||
Sbjct 4843 ATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACCAATACCACCAGCAGTCTTT 4784
Query 72322 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 72381
|| || || || || || ||||| || || || ||||| ||||| || ||| |||||
Sbjct 4783 GAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCAATACTGTCCTCCTTCATG 4724
Query 72382 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 72441
| | || || || || ||| || | | || || ||||| || | |||||||
Sbjct 4723 TCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGA 4664
Query 72442 GAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA 72501
||||| ||||| || |||||| ||||| || || || || || || | |||| |
Sbjct 4663 GAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGTTTCGATGACCTTCTCTACA 4604
Query 72502 TCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATC 72561
|| | ||| ||||| || || |||||||| | ||| || ||||| | |||| | |
Sbjct 4603 TCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTGTTGAGGGCGTTCAGCAACT 4544
Query 72562 TTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 72621
||| || ||| | ||| || || || | ||| || || || || || | ||
Sbjct 4543 TTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTTGAATCCGAAGTATTGATAA 4484
Query 72622 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATA 72681
||||| || || || | ||| | ||||| | || |||| || | ||| |
Sbjct 4483 TTGAAGTCACGATCATAGACAATGGCAGAATTAAATTCATCCGCATGCCGCATCACTGTT 4424
Query 72682 TCCATGGTGATACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTT 72740
|| || | || || || || || | | || ||| || || || | ||| |
Sbjct 4423 TCGTACGT-AGCCTGCGATATCATTGGGGCAGGTCGTTGATTCTTCGGGTTGATATAATG 4365
Query 72741 GAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATAC 72800
| | | || || ||||| | |||| ||||||| |||| |||||| ||||| |||||
Sbjct 4364 GTAGAGGTCATCTATCACCGAAGAAAATTGTTTTTTAGTTTGCTTGTGGAGATTGGATAC 4305
Query 72801 GGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836
||||| | ||| ||||| || || || ||||| ||
Sbjct 4304 AGCTATCCGGGCAGCTAGGATTGCGTAGTCTGGGTG 4269
Score = 104 bits (114), Expect = 3e-17
Identities = 205/303 (68%), Gaps = 3/303 (1%)
Strand=Plus/Minus
Query 70788 TTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACAT 70847
||| | ||||| ||||||||||| |||| ||||| || | ||||| |||||||||||
Sbjct 6396 TTCTTGGTCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACAT 6337
Query 70848 GCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCT 70907
|| ||||| ||||| || |||| || |||||||| || || | |||| | |
Sbjct 6336 TCCGGTTTTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTGCCCATGGT 6277
Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967
|| || | || ||||| | ||||| ||| ||||| || || || | || ||
Sbjct 6276 CGGCTCCTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGC 6217
Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027
|||||| | | || || || | |||||||| | || ||||| | || ||
Sbjct 6216 AGCCATCTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGAT 6157
Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084
||| | ||| | ||| | | |||||||| || || || || |||||||| | |||||
Sbjct 6156 ATCCTGTGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAATACGGTTTTT 6097
Query 71085 GAT 71087
||
Sbjct 6096 CAT 6094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671101918217440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |