Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq134 230 3e-55 >seq134 Length=7744 Score = 230 bits (254), Expect = 3e-55 Identities = 542/816 (66%), Gaps = 2/816 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || || ||||||||||||||||| |||||||||||| || ||||| | | | | Sbjct 5083 ACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAAAAGATCACGAGCCCGAACT 5024 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || ||||| ||||| || || | ||| | | |||||||| ||||||||| Sbjct 5023 TCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGT 4964 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | || || || | | ||||||||||||| || |||||||| || | |||||||| Sbjct 4963 TCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCCCTGGTCGACATATCTAGCA 4904 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 ||||| || |||| | || |||||||| || || || || | ||||| || |||| Sbjct 4903 GTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCA 4844 Query 72262 ATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTA 72321 || || || || ||||||| | ||| ||||| || || || || | || Sbjct 4843 ATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACCAATACCACCAGCAGTCTTT 4784 Query 72322 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 72381 || || || || || || ||||| || || || ||||| ||||| || ||| ||||| Sbjct 4783 GAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCAATACTGTCCTCCTTCATG 4724 Query 72382 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 72441 | | || || || || ||| || | | || || ||||| || | ||||||| Sbjct 4723 TCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGA 4664 Query 72442 GAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA 72501 ||||| ||||| || |||||| ||||| || || || || || || | |||| | Sbjct 4663 GAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGTTTCGATGACCTTCTCTACA 4604 Query 72502 TCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATC 72561 || | ||| ||||| || || |||||||| | ||| || ||||| | |||| | | Sbjct 4603 TCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTGTTGAGGGCGTTCAGCAACT 4544 Query 72562 TTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 72621 ||| || ||| | ||| || || || | ||| || || || || || | || Sbjct 4543 TTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTTGAATCCGAAGTATTGATAA 4484 Query 72622 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATA 72681 ||||| || || || | ||| | ||||| | || |||| || | ||| | Sbjct 4483 TTGAAGTCACGATCATAGACAATGGCAGAATTAAATTCATCCGCATGCCGCATCACTGTT 4424 Query 72682 TCCATGGTGATACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTT 72740 || || | || || || || || | | || ||| || || || | ||| | Sbjct 4423 TCGTACGT-AGCCTGCGATATCATTGGGGCAGGTCGTTGATTCTTCGGGTTGATATAATG 4365 Query 72741 GAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATAC 72800 | | | || || ||||| | |||| ||||||| |||| |||||| ||||| ||||| Sbjct 4364 GTAGAGGTCATCTATCACCGAAGAAAATTGTTTTTTAGTTTGCTTGTGGAGATTGGATAC 4305 Query 72801 GGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 ||||| | ||| ||||| || || || ||||| || Sbjct 4304 AGCTATCCGGGCAGCTAGGATTGCGTAGTCTGGGTG 4269 Score = 104 bits (114), Expect = 3e-17 Identities = 205/303 (68%), Gaps = 3/303 (1%) Strand=Plus/Minus Query 70788 TTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACAT 70847 ||| | ||||| ||||||||||| |||| ||||| || | ||||| ||||||||||| Sbjct 6396 TTCTTGGTCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACAT 6337 Query 70848 GCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCT 70907 || ||||| ||||| || |||| || |||||||| || || | |||| | | Sbjct 6336 TCCGGTTTTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTGCCCATGGT 6277 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 || || | || ||||| | ||||| ||| ||||| || || || | || || Sbjct 6276 CGGCTCCTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGC 6217 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 |||||| | | || || || | |||||||| | || ||||| | || || Sbjct 6216 AGCCATCTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGAT 6157 Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 ||| | ||| | ||| | | |||||||| || || || || |||||||| | ||||| Sbjct 6156 ATCCTGTGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAATACGGTTTTT 6097 Query 71085 GAT 71087 || Sbjct 6096 CAT 6094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671101918217440