Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq819 84.2 2e-11
>seq819
Length=4427
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| ||||||||||| ||||| ||||| || |||| |||||||| || || |||
Sbjct 1776 GTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATCTTCGAGCTGCTTTCCA 1717
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091
|| ||||||||||||||||||| || || || |||||||| ||
Sbjct 1716 GCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATC 1673
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041
|||| ||| ||||||||||| || ||||| ||| | || | ||| || || |||
Sbjct 2010 TGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCAAGCTGT 1951
Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101
|| || || |||| || |||||||| || || || || || ||||| || |||||
Sbjct 1950 TTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCTTGGATTTTG 1891
Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161
||| | | || | || || | | ||| ||||||| ||| | || ||||||||
Sbjct 1890 CTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATAGTTTTGCCGGTA 1831
Query 143162 AATGTTTTTACGAATATTTGCATA 143185
| || |||||||| || ||||||
Sbjct 1830 AGGGTCTTTACGAAGATCTGCATA 1807
Score = 82.4 bits (90), Expect = 8e-11
Identities = 159/233 (68%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014
||||| || || || | ||| || ||||| | || || || || |||||||| ||
Sbjct 2265 TGGCCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCC 2206
Query 143015 CTCATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 143072
| || |||| ||||| || |||||||||||| |||| || || |||||||| |
Sbjct 2205 GAAAGCGT--TCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTG 2148
Query 143073 GAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTT 143132
| || || ||||| ||||| ||||| ||||| | || | ||||| | | |
Sbjct 2147 GTGGGATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCT 2088
Query 143133 CTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
| || || | || | || ||||| |||| ||||| ||||| || ||||||
Sbjct 2087 CGACCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCATA 2035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506986235350080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |