Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq302 136 6e-27
>seq302
Length=30871
Score = 136 bits (150), Expect = 6e-27
Identities = 333/501 (66%), Gaps = 23/501 (5%)
Strand=Plus/Minus
Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420
|| || || || ||| | |||| || || ||||| || ||| | ||||| | | ||
Sbjct 11698 ATCCGCAAGAAAGCTGATTGGGCCATCCGATGGATTGAAGACAAGGAGTCTACCTTTGCG 11639
Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480
| | || || || ||||| || || || ||||||||||| || || || |
Sbjct 11638 CAGCGTCTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGATCCTTCGCTTCA 11579
Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540
||||| ||||| ||||| ||||| || ||||| || || ||| ||||||| ||||
Sbjct 11578 ATCTTCTGGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTTCTAACGAGCTTATT 11519
Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600
||||| ||||||||| ||||| ||| |||||| ||| || ||| ||| |||||
Sbjct 11518 TCTCGTGACGAGGGCTTACACACTGATTTTGCCTGTCTCCTCTTTTCTCACT---TGCGT 11462
Query 125601 C-CCGAGTGCAGATCC-AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGA 125658
| ||| ||| ||| | || ||| | || | || || || || | |
Sbjct 11461 CACCG--------TCCTAGCCAAGAGGCTGTCGAGAGGATCATCACTGAAGCTGTCACTA 11410
Query 125659 TAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGC 125718
| || || ||||| || | || | || || ||| | | || |||||| |||||
Sbjct 11409 TCGAGCAGGAGTTCCTCTCAGATGCGCTCCCAGTCGCGCTTCTCGGAATGAACGCCAAGC 11350
Query 125719 TAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATT--GGCCG 125776
| |||||| | ||||| ||||| || || ||||| || || |||| || |||
Sbjct 11349 TCATGTGCCAATACATTGAGTTCGTCGCTGATCGCCTCCT-----CGTTGCTTTGGGCAA 11295
Query 125777 CAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGG 125833
||||| | |||||| ||| || || ||||| |||||| | ||| || || | ||
Sbjct 11294 CAAGAAAGTCTACAACTCCACCAACCCATTTGACTTCATGGATAACATCTCCCTGGCAGG 11235
Query 125834 TAAGACCAACTTTTTCGAGAA 125854
||| |||||||| ||||| ||
Sbjct 11234 TAAAACCAACTTCTTCGAAAA 11214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741018034161440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |