Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq302 136 6e-27 >seq302 Length=30871 Score = 136 bits (150), Expect = 6e-27 Identities = 333/501 (66%), Gaps = 23/501 (5%) Strand=Plus/Minus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || || || ||| | |||| || || ||||| || ||| | ||||| | | || Sbjct 11698 ATCCGCAAGAAAGCTGATTGGGCCATCCGATGGATTGAAGACAAGGAGTCTACCTTTGCG 11639 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | || || || ||||| || || || ||||||||||| || || || | Sbjct 11638 CAGCGTCTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGATCCTTCGCTTCA 11579 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| ||||| ||||| ||||| || ||||| || || ||| ||||||| |||| Sbjct 11578 ATCTTCTGGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTTCTAACGAGCTTATT 11519 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600 ||||| ||||||||| ||||| ||| |||||| ||| || ||| ||| ||||| Sbjct 11518 TCTCGTGACGAGGGCTTACACACTGATTTTGCCTGTCTCCTCTTTTCTCACT---TGCGT 11462 Query 125601 C-CCGAGTGCAGATCC-AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGA 125658 | ||| ||| ||| | || ||| | || | || || || || | | Sbjct 11461 CACCG--------TCCTAGCCAAGAGGCTGTCGAGAGGATCATCACTGAAGCTGTCACTA 11410 Query 125659 TAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGC 125718 | || || ||||| || | || | || || ||| | | || |||||| ||||| Sbjct 11409 TCGAGCAGGAGTTCCTCTCAGATGCGCTCCCAGTCGCGCTTCTCGGAATGAACGCCAAGC 11350 Query 125719 TAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATT--GGCCG 125776 | |||||| | ||||| ||||| || || ||||| || || |||| || ||| Sbjct 11349 TCATGTGCCAATACATTGAGTTCGTCGCTGATCGCCTCCT-----CGTTGCTTTGGGCAA 11295 Query 125777 CAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGG 125833 ||||| | |||||| ||| || || ||||| |||||| | ||| || || | || Sbjct 11294 CAAGAAAGTCTACAACTCCACCAACCCATTTGACTTCATGGATAACATCTCCCTGGCAGG 11235 Query 125834 TAAGACCAACTTTTTCGAGAA 125854 ||| |||||||| ||||| || Sbjct 11234 TAAAACCAACTTCTTCGAAAA 11214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741018034161440