Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq819 93.3 3e-14 >seq819 Length=4427 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | |||||| || || ||||| || ||| || || || |||||||| || Sbjct 2263 GCCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGA 2204 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || ||| | ||||||| ||||| ||||| | || | || || || || ||| Sbjct 2203 AAGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGG 2144 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| |||||||| ||||| | || || || || | || || Sbjct 2143 GATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGAC 2084 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || |||||||| || ||||||||||| || || || |||||| Sbjct 2083 CTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCATA 2035 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || |||||||| ||||| ||||| | | | | ||||| | || Sbjct 1783 ATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATCTTCGAGCTG 1724 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | |||| |||||| || || || || |||||||| || ||||| Sbjct 1723 CTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATCCTGGATTTT 1664 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 |||||| || | || |||||||| | ||| || || ||||| ||||| || || || Sbjct 1663 GCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGGTCTTGCCAGT 1604 Query 15340 CAGAGTTTTTACAA 15353 || ||||| |||| Sbjct 1603 GAGGGTTTTCACAA 1590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362159583921804