Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq819 123 2e-23
seq1424 93.3 4e-14
>seq819
Length=4427
Score = 123 bits (136), Expect = 2e-23
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || | ||||| ||||||||| || | ||| ||||| || | ||| || ||
Sbjct 2262 CCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCG-- 2205
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| || ||| || ||| || |||||||| || ||||||| | || ||||||||||| |
Sbjct 2204 AAAGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTG 2145
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
| || ||||| ||||| | ||||| || ||| | | | ||||||| | ||||
Sbjct 2144 GGATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGA 2085
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || | ||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 2084 CCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||||||||| | ||||| | || |||||| ||||| || ||||| |||||
Sbjct 1962 TCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTA 1903
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||||| || ||| | ||| || || | | ||||| |||| || ||
Sbjct 1902 TCTTGGATTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATA 1843
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || ||||| || || || |||||||||||
Sbjct 1842 GTTTTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808
>seq1424
Length=24560
Score = 93.3 bits (102), Expect = 4e-14
Identities = 133/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877
||||||| | |||||||||||| | || | |||||| |||||||| ||| | ||||
Sbjct 23809 CCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGA 23750
Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937
| |||| ||||| || || || ||||| || || || | ||||| |||||| |
Sbjct 23749 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGT 23690
Query 94938 CGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995
||| ||||| || ||| ||||| |||| |||||||| || || || || || || ||
Sbjct 23689 CGATGGTGTC-GC-TGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGAC 23632
Query 94996 AAAG 94999
|||
Sbjct 23631 GAAG 23628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448266297423840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |