Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq465 100 4e-17 >seq465 Length=5923 Score = 100 bits (110), Expect = 4e-17 Identities = 85/102 (83%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || || ||||||| |||| || || ||||||||||| || ||||| ||||| || | Sbjct 4387 CGCAAAACGCCATCGCAAGATC-CTCCGCGATAACATCCAGGGCATCACTAAGCCTGCCA 4329 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| |||||||| |||||||| || ||||||||| |||||| Sbjct 4328 TCCGCCGTCTGGCCCGTCGTGGCGGTGTCAAGCGTATCTCTG 4287 Score = 80.6 bits (88), Expect = 4e-11 Identities = 114/158 (72%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGAT 16594 || |||| ||||||| |||| || |||| ||| ||||| | |||| || | ||| Sbjct 4172 TGATCTACGAAGAGACCCGTGGCGTGCTGAA-ATCGTTCCTTGAATCCGTCATTCGCGAT 4114 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 || || ||||||||||| || || || ||||||||||| || ||||| | || ||| Sbjct 4113 GCGGTCACTTATACCGAGCATGCGAAGCGCAAGACTGTCACTTCGCTGGATGTGGTGTAT 4054 Query 16655 GCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||| | || || || | ||||||| ||||| Sbjct 4053 GCGTTGAAGAGACAGGGACGGACACTTTATGGGTTTGG 4016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071136819692