Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq134 230 3e-55 >seq134 Length=7744 Score = 230 bits (254), Expect = 3e-55 Identities = 589/894 (66%), Gaps = 2/894 (0%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || |||||| | || | |||| |||| || || ||||| || || | | | | Sbjct 5161 TCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCATTGGGGCAAAAGAGAGTC 5102 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || || || | | || || || ||||||||||||||||| |||||||||||| || Sbjct 5101 CATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAAA 5042 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 ||||| | | | | ||| || ||||| ||||| || || | ||| | | | Sbjct 5041 AGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAAA 4982 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 ||||||| ||||||||||| | || || || | | |||| |||||||| || |||||| Sbjct 4981 ATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCCC 4922 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 || || | |||||||| ||||| || |||| | || |||||||| || |||||||| Sbjct 4921 TGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGAG 4862 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497 ||||| || |||| || || || || ||||||| ||| ||||| Sbjct 4861 GATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACCA 4802 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557 || || || || | || || || || || || || |||||||| || |||||||| Sbjct 4801 ATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCA 4742 Query 63558 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63617 || || || || |||||| | || || || || ||| || | | || || Sbjct 4741 ATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCG 4682 Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 ||||| || | |||||||||||| ||||| || |||||| ||| | || || || || Sbjct 4681 GCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGTT 4622 Query 63678 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63737 || || | |||| ||| | ||||||||| || || |||||||| | |||||| Sbjct 4621 TCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTGT 4562 Query 63738 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63797 ||||| | |||| | | ||| ||| ||| | ||| || || || | ||| || Sbjct 4561 TGAGGGCGTTCAGCAACTTTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTTG 4502 Query 63798 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCC 63857 || || || || | || ||||| || || || | ||| | || || | || |||| Sbjct 4501 AATCCGAAGTATTGATAATTGAAGTCACGATCATAGACAATGGCAGAATTAAATTCATCC 4442 Query 63858 TTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAGAATGTTTCCCATT 63916 || | ||| | || || | || || || || || | | || ||| Sbjct 4441 GCATGCCGCATCACTGTTTCGTACGT-AGCCTGCGATATCATTGGGGCAGGTCGTTGATT 4383 Query 63917 TTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTC 63976 || || || | ||| | | | | || || ||||| | |||| ||||||| |||| Sbjct 4382 CTTCGGGTTGATATAATGGTAGAGGTCATCTATCACCGAAGAAAATTGTTTTTTAGTTTG 4323 Query 63977 CTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 |||||| ||||| ||||| ||||| | ||| ||||| || || || || || || Sbjct 4322 CTTGTGGAGATTGGATACAGCTATCCGGGCAGCTAGGATTGCGTAGTCTGGGTG 4269 Score = 98.7 bits (108), Expect = 1e-15 Identities = 193/285 (68%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 61988 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 62047 ||||| || || ||||| ||||| ||||| | | ||||| |||||||||||||| || Sbjct 6390 GTCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGT 6331 Query 62048 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 62107 ||| ||||| || |||| || |||||||| || || | |||| |||| || Sbjct 6330 TTTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTGCCCATGGTCGGCTC 6271 Query 62108 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 62167 | ||||||||| | ||| || ||| ||||| || || || | || |||||||| Sbjct 6270 CTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAGCCAT 6211 Query 62168 TTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTC 62227 | | || || || | |||||||| | || ||||| | || ||||| | Sbjct 6210 CTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATATCCTG 6151 Query 62228 TGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 62269 ||| | ||| | | |||||||| || || || || || ||||| Sbjct 6150 TGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAAT 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622912595283040