Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq134 230 3e-55
>seq134
Length=7744
Score = 230 bits (254), Expect = 3e-55
Identities = 589/894 (66%), Gaps = 2/894 (0%)
Strand=Plus/Minus
Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197
|| |||||| | || | |||| |||| || || ||||| || || | | | |
Sbjct 5161 TCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCATTGGGGCAAAAGAGAGTC 5102
Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257
|| || || | | || || || ||||||||||||||||| |||||||||||| ||
Sbjct 5101 CATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAAA 5042
Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317
||||| | | | | ||| || ||||| ||||| || || | ||| | | |
Sbjct 5041 AGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAAA 4982
Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377
||||||| ||||||||||| | || || || | | |||| |||||||| || ||||||
Sbjct 4981 ATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCCC 4922
Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437
|| || | |||||||| ||||| || |||| | || |||||||| || ||||||||
Sbjct 4921 TGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGAG 4862
Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497
||||| || |||| || || || || ||||||| ||| |||||
Sbjct 4861 GATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACCA 4802
Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557
|| || || || | || || || || || || || |||||||| || ||||||||
Sbjct 4801 ATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCA 4742
Query 63558 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63617
|| || || || |||||| | || || || || ||| || | | || ||
Sbjct 4741 ATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCG 4682
Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677
||||| || | |||||||||||| ||||| || |||||| ||| | || || || ||
Sbjct 4681 GCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGTT 4622
Query 63678 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63737
|| || | |||| ||| | ||||||||| || || |||||||| | ||||||
Sbjct 4621 TCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTGT 4562
Query 63738 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63797
||||| | |||| | | ||| ||| ||| | ||| || || || | ||| ||
Sbjct 4561 TGAGGGCGTTCAGCAACTTTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTTG 4502
Query 63798 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCC 63857
|| || || || | || ||||| || || || | ||| | || || | || ||||
Sbjct 4501 AATCCGAAGTATTGATAATTGAAGTCACGATCATAGACAATGGCAGAATTAAATTCATCC 4442
Query 63858 TTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAGAATGTTTCCCATT 63916
|| | ||| | || || | || || || || || | | || |||
Sbjct 4441 GCATGCCGCATCACTGTTTCGTACGT-AGCCTGCGATATCATTGGGGCAGGTCGTTGATT 4383
Query 63917 TTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTC 63976
|| || || | ||| | | | | || || ||||| | |||| ||||||| ||||
Sbjct 4382 CTTCGGGTTGATATAATGGTAGAGGTCATCTATCACCGAAGAAAATTGTTTTTTAGTTTG 4323
Query 63977 CTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030
|||||| ||||| ||||| ||||| | ||| ||||| || || || || || ||
Sbjct 4322 CTTGTGGAGATTGGATACAGCTATCCGGGCAGCTAGGATTGCGTAGTCTGGGTG 4269
Score = 98.7 bits (108), Expect = 1e-15
Identities = 193/285 (68%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 61988 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 62047
||||| || || ||||| ||||| ||||| | | ||||| |||||||||||||| ||
Sbjct 6390 GTCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGT 6331
Query 62048 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 62107
||| ||||| || |||| || |||||||| || || | |||| |||| ||
Sbjct 6330 TTTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTGCCCATGGTCGGCTC 6271
Query 62108 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 62167
| ||||||||| | ||| || ||| ||||| || || || | || ||||||||
Sbjct 6270 CTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAGCCAT 6211
Query 62168 TTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTC 62227
| | || || || | |||||||| | || ||||| | || ||||| |
Sbjct 6210 CTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATATCCTG 6151
Query 62228 TGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 62269
||| | ||| | | |||||||| || || || || || |||||
Sbjct 6150 TGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAAT 6106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622912595283040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |