Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq134 223 9e-53 seq302 98.7 3e-15 >seq134 Length=7744 Score = 223 bits (246), Expect = 9e-53 Identities = 447/657 (68%), Gaps = 8/657 (1%) Strand=Plus/Plus Query 363426 TCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGG 363485 ||| ||||| || | ||| ||||||||| || || ||| | |||||||||||| | || Sbjct 4529 TCGAATCAACGGCAAAGTTGCTGAACGCCCTCAACACATGATCATGCGTGTTGCTGTCGG 4588 Query 363486 TATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGT 363545 || ||| | ||||| || | || ||||| ||||| || | || ||| Sbjct 4589 AATTCATGGAGATGATGTAGAGAAGGTCATCGAAACCTATAACCTCAT--GT-CTCAAAA 4645 Query 363546 ATTC---ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTC 363602 |||| ||||| || | || || | | |||||| || || | | || |||||| | Sbjct 4646 ATTCTTCACGCATGCTTCTCCTACCCTTTTCAATGCCGGTACCCCGCAACCTCAGATGGC 4705 Query 363603 TTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAA 363662 ||| ||||| ||| | | |||||||| || || |||||||| | ||||| | || Sbjct 4706 TTCGTGCTTCCTTATCGACATGAAGGAGGACAGTATTGAGGGTATTTACGACACGTTGAA 4765 Query 363663 GAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG 363722 || |||||| | ||||| |||| ||| || || |||||| | || ||| |||| Sbjct 4766 GACTTGTGCCTTGATTTCAAAGACTGCTGGTGGTATTGGTCTCAACATTCACCGCATTCG 4825 Query 363723 TG-CACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGC 363781 || ||| | | ||||||| ||| ||| |||| ||| || || | ||||| |||| Sbjct 4826 TGGCACCGG-CTCTTACATTGCCGGAACAAATGGATCCTCAAACGGAATCGTTCCAATGC 4884 Query 363782 TTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGG 363841 | || || || |||| ||||| || || ||||||||||| || || || || | Sbjct 4885 TGCGCGTTTTCAACAACACTGCTAGATATGTCGACCAGGGAGGTAATAAACGGCCGGGAG 4944 Query 363842 CGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGA 363901 | || ||||| |||||||| || || | |||||||| || || | || ||||| | Sbjct 4945 CTTTCGCTATTTATCTCGAACCGTGGCACACTGATATTTTCGAATTCTTGGACCTCCGTA 5004 Query 363902 AAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG 363961 | ||| ||||| || ||| | || || |||||||| ||| || |||||| ||| Sbjct 5005 AGAACCACGGAAAGGAAGAAGTTCGGGCTCGTGATCTTTTCCTAGCTCTTTGGACACCTG 5064 Query 363962 ACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021 | | ||||||||||| || ||| | | | ||| | ||||||||||| | ||| Sbjct 5065 ATCTCTTTATGAAGCGTGTTGAGAAAAATGGCGAATGGACTCTCTTTTGCCCCAATGAAG 5124 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATG 364078 ||||| | | ||||| | |||| ||| | || ||||| ||||||||||||| Sbjct 5125 CGCCAGGCTTGGCGGATGTCTATGGTGCCGAGTTTGAGGCTCTTTACGAAAAGTATG 5181 Score = 147 bits (162), Expect = 6e-30 Identities = 679/1064 (64%), Gaps = 30/1064 (3%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || |||||||| |||| ||| || | || | || | |||||| || | |||| |||| Sbjct 5284 GCTCAGAAGCTTTGGTATGCTATTCTTGAAGCTCAAACTGAGACTGGTAACCCCTTTATG 5343 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| || | |||||| ||| ||||||| || |||| || |||||| || || Sbjct 5344 CTTTACAAGGACGCTTGCAACGAGAAGAGCAACCAGAAGAACCTAGGCACAATT-AGAAG 5402 Query 364231 AGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 | ||||| || |||||||| ||||| || | | || || ||| ||| || || || Sbjct 5403 CTCTAACCTGTGCACCGAGATCATTGAGTATTGCTCGCCAGATGAGGTTGCAGTGTGCAA 5462 Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACT-------TTTGACCACC 364342 | | ||||| || || | || | || || | || ||| | ||| | Sbjct 5463 CTTGGCGTCTATTGCTTTGCCTACCTTCGTGGATCCTG-TACGAGGGGAGTATGATTTCG 5521 Query 364343 AGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGA 364402 | || |||| ||||| | || | | || || ||||| | ||||| || Sbjct 5522 GCAAGCTCCATGAAGTAACTCAAGTTGTCGTTCGTAACCTTAACAAGATCATCGATCGGA 5581 Query 364403 ATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTG 364462 | || ||||| | ||||| || || | ||||||||||| |||| | | Sbjct 5582 ACTACTATCCGGTCGAGGAAGCAAGACGAAGCAACTTCCGTCATCGCCCCATTGCTTGCG 5641 Query 364463 GTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAA--GATGGCATTTGATTCGCCTGA 364520 |||| |||||||| ||||| | || | ||||| | | |||||||||| ||||| Sbjct 5642 GTGTCCAGGGCCTTGCTGATGCCTTCCT--TGCTCTGCGGCTTCCATTTGATTCACCTGA 5699 Query 364521 CGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTC 364580 ||| | |||| | | || || |||||||| || || ||||||| || Sbjct 5700 GGCTAAGCTCTTAAACATTCAAATTTTCGAAACAATTTACCACGCGAGTTTGACTGCGTC 5759 Query 364581 GTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCA 364640 ||||| |||| |||| | || || || || ||||| || ||||| | || || Sbjct 5760 CTGTGAGCTGGCTAAAATTGACGGCCCATATTCCACGTATGAAGGCTCCCCCGTCTCTCA 5819 Query 364641 GGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATAC 364700 ||| | | || | |||| | ||||| || || || | | || ||| | ||||| | Sbjct 5820 GGGTATCCTTCAATATGATATGTGGAAAGTGACCCCCACCGACCTCTGGGATTGGGACTC 5879 Query 364701 GCTACGTTCCAACGTTAAG--AAGCATGGTACTCGCAAC---TCCCTCGTTACAGCGCCC 364755 ||| | ||| | | |||||||| || || | || ||| |||||| Sbjct 5880 GCT--GAAACAAGATATTGCTAAGCATGGAGTGCGTAATAGTTTGCTTGTT---GCGCCC 5934 Query 364756 ATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACA 364815 ||||| || || || ||||| || || |||||| ||||| || || | || Sbjct 5935 ATGCCGACTGCCAGCACCAGCCAGATTCTTGGGTTCAACGAATGCTTTGAGCCATACACC 5994 Query 364816 AGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTA 364875 || | || ||||| || ||||| | || ||||| | | || ||| || || Sbjct 5995 TCTAACATCTACTCACGTCGTGTTCTGGCGGGTGAATTCCAAATCGTCAATCCGTGGCTC 6054 Query 364876 GTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCC 364935 | ||||| || ||| || |||||| |||| |||||| ||| ||| || || Sbjct 6055 CTGAAGGACCTCGTGGACATGGGTCTGTGGTCCGACAACATGAAAAACCGTATTATTGCG 6114 Query 364936 GCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAA 364995 | || ||| | ||||||||||| | ||| | ||| | || || | || || Sbjct 6115 GACGGAGGCTCTATTCAGAACATTCCCAACATCCCACAGGATATCAAAGCTCTATATAAG 6174 Query 364996 ACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTT 365055 ||||| |||||||| || ||||||| | || | ||||| || ||||| ||||| ||| Sbjct 6175 ACCGTCTGGGAAATATCTCAGCGAACTATAGTTCAGATGGCTGCTGATCGAGGTGCATTT 6234 Query 365056 ATCTGTCAGAGCCAGTCGTTTAACGTATTCA--TGACTCAGCCAACCTCCGCCAAGCTTA 365113 ||| || |||||| | || ||| || ||| |||| ||| | ||| ||| Sbjct 6235 ATCGACCAATCCCAGTCTCTCAA--TATCCATTTGAAGGAGCCGACCATGGGCAAAATTA 6292 Query 365114 CATCCATGCATTTCTACGGG-TGGAAATCCGGTCTTAAGACAGG 365156 | |||||||||| ||||| |||||| ||||| || || || Sbjct 6293 CCAGCATGCATTTC-ACGGGTTGGAAACTTGGTCTGAAAACCGG 6335 >seq302 Length=30871 Score = 98.7 bits (108), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGAT-GAA--CAATGAACGTTCATTCGCGGAACGT 22494 || || || |||||||| | |||||| ||| ||| || | | || ||| | ||| Sbjct 11692 AAGAAAGCTGATTGGGCCATCCGATGGATTGAAGACAAGGAGTCTACCTTTGCGCAGCGT 11633 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 ||| | || || |||| ||||||||||| ||||| ||| | || | ||||||| Sbjct 11632 CTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGATCCTTCGCTTCAATCTTC 11573 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || ||||| | ||||||| ||||| |||||||| || ||| | ||| || Sbjct 11572 TGGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTTCTAACGAGCTTATTTCTCGT 11513 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGT 22644 || ||||| | || || |||||||| ||| Sbjct 11512 GACGAGGGCTTACACACTGATTTTGCCTGT 11483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303279388675208