Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq134 223 9e-53
seq302 98.7 3e-15
>seq134
Length=7744
Score = 223 bits (246), Expect = 9e-53
Identities = 447/657 (68%), Gaps = 8/657 (1%)
Strand=Plus/Plus
Query 363426 TCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGG 363485
||| ||||| || | ||| ||||||||| || || ||| | |||||||||||| | ||
Sbjct 4529 TCGAATCAACGGCAAAGTTGCTGAACGCCCTCAACACATGATCATGCGTGTTGCTGTCGG 4588
Query 363486 TATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGT 363545
|| ||| | ||||| || | || ||||| ||||| || | || |||
Sbjct 4589 AATTCATGGAGATGATGTAGAGAAGGTCATCGAAACCTATAACCTCAT--GT-CTCAAAA 4645
Query 363546 ATTC---ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTC 363602
|||| ||||| || | || || | | |||||| || || | | || |||||| |
Sbjct 4646 ATTCTTCACGCATGCTTCTCCTACCCTTTTCAATGCCGGTACCCCGCAACCTCAGATGGC 4705
Query 363603 TTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAA 363662
||| ||||| ||| | | |||||||| || || |||||||| | ||||| | ||
Sbjct 4706 TTCGTGCTTCCTTATCGACATGAAGGAGGACAGTATTGAGGGTATTTACGACACGTTGAA 4765
Query 363663 GAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG 363722
|| |||||| | ||||| |||| ||| || || |||||| | || ||| ||||
Sbjct 4766 GACTTGTGCCTTGATTTCAAAGACTGCTGGTGGTATTGGTCTCAACATTCACCGCATTCG 4825
Query 363723 TG-CACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGC 363781
|| ||| | | ||||||| ||| ||| |||| ||| || || | ||||| ||||
Sbjct 4826 TGGCACCGG-CTCTTACATTGCCGGAACAAATGGATCCTCAAACGGAATCGTTCCAATGC 4884
Query 363782 TTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGG 363841
| || || || |||| ||||| || || ||||||||||| || || || || |
Sbjct 4885 TGCGCGTTTTCAACAACACTGCTAGATATGTCGACCAGGGAGGTAATAAACGGCCGGGAG 4944
Query 363842 CGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGA 363901
| || ||||| |||||||| || || | |||||||| || || | || ||||| |
Sbjct 4945 CTTTCGCTATTTATCTCGAACCGTGGCACACTGATATTTTCGAATTCTTGGACCTCCGTA 5004
Query 363902 AAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG 363961
| ||| ||||| || ||| | || || |||||||| ||| || |||||| |||
Sbjct 5005 AGAACCACGGAAAGGAAGAAGTTCGGGCTCGTGATCTTTTCCTAGCTCTTTGGACACCTG 5064
Query 363962 ACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021
| | ||||||||||| || ||| | | | ||| | ||||||||||| | |||
Sbjct 5065 ATCTCTTTATGAAGCGTGTTGAGAAAAATGGCGAATGGACTCTCTTTTGCCCCAATGAAG 5124
Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATG 364078
||||| | | ||||| | |||| ||| | || ||||| |||||||||||||
Sbjct 5125 CGCCAGGCTTGGCGGATGTCTATGGTGCCGAGTTTGAGGCTCTTTACGAAAAGTATG 5181
Score = 147 bits (162), Expect = 6e-30
Identities = 679/1064 (64%), Gaps = 30/1064 (3%)
Strand=Plus/Plus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| |||||||| |||| ||| || | || | || | |||||| || | |||| ||||
Sbjct 5284 GCTCAGAAGCTTTGGTATGCTATTCTTGAAGCTCAAACTGAGACTGGTAACCCCTTTATG 5343
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
| ||||| || | |||||| ||| ||||||| || |||| || |||||| || ||
Sbjct 5344 CTTTACAAGGACGCTTGCAACGAGAAGAGCAACCAGAAGAACCTAGGCACAATT-AGAAG 5402
Query 364231 AGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289
| ||||| || |||||||| ||||| || | | || || ||| ||| || || ||
Sbjct 5403 CTCTAACCTGTGCACCGAGATCATTGAGTATTGCTCGCCAGATGAGGTTGCAGTGTGCAA 5462
Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACT-------TTTGACCACC 364342
| | ||||| || || | || | || || | || ||| | ||| |
Sbjct 5463 CTTGGCGTCTATTGCTTTGCCTACCTTCGTGGATCCTG-TACGAGGGGAGTATGATTTCG 5521
Query 364343 AGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGA 364402
| || |||| ||||| | || | | || || ||||| | ||||| ||
Sbjct 5522 GCAAGCTCCATGAAGTAACTCAAGTTGTCGTTCGTAACCTTAACAAGATCATCGATCGGA 5581
Query 364403 ATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTG 364462
| || ||||| | ||||| || || | ||||||||||| |||| | |
Sbjct 5582 ACTACTATCCGGTCGAGGAAGCAAGACGAAGCAACTTCCGTCATCGCCCCATTGCTTGCG 5641
Query 364463 GTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAA--GATGGCATTTGATTCGCCTGA 364520
|||| |||||||| ||||| | || | ||||| | | |||||||||| |||||
Sbjct 5642 GTGTCCAGGGCCTTGCTGATGCCTTCCT--TGCTCTGCGGCTTCCATTTGATTCACCTGA 5699
Query 364521 CGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTC 364580
||| | |||| | | || || |||||||| || || ||||||| ||
Sbjct 5700 GGCTAAGCTCTTAAACATTCAAATTTTCGAAACAATTTACCACGCGAGTTTGACTGCGTC 5759
Query 364581 GTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCA 364640
||||| |||| |||| | || || || || ||||| || ||||| | || ||
Sbjct 5760 CTGTGAGCTGGCTAAAATTGACGGCCCATATTCCACGTATGAAGGCTCCCCCGTCTCTCA 5819
Query 364641 GGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATAC 364700
||| | | || | |||| | ||||| || || || | | || ||| | ||||| |
Sbjct 5820 GGGTATCCTTCAATATGATATGTGGAAAGTGACCCCCACCGACCTCTGGGATTGGGACTC 5879
Query 364701 GCTACGTTCCAACGTTAAG--AAGCATGGTACTCGCAAC---TCCCTCGTTACAGCGCCC 364755
||| | ||| | | |||||||| || || | || ||| ||||||
Sbjct 5880 GCT--GAAACAAGATATTGCTAAGCATGGAGTGCGTAATAGTTTGCTTGTT---GCGCCC 5934
Query 364756 ATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACA 364815
||||| || || || ||||| || || |||||| ||||| || || | ||
Sbjct 5935 ATGCCGACTGCCAGCACCAGCCAGATTCTTGGGTTCAACGAATGCTTTGAGCCATACACC 5994
Query 364816 AGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTA 364875
|| | || ||||| || ||||| | || ||||| | | || ||| || ||
Sbjct 5995 TCTAACATCTACTCACGTCGTGTTCTGGCGGGTGAATTCCAAATCGTCAATCCGTGGCTC 6054
Query 364876 GTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCC 364935
| ||||| || ||| || |||||| |||| |||||| ||| ||| || ||
Sbjct 6055 CTGAAGGACCTCGTGGACATGGGTCTGTGGTCCGACAACATGAAAAACCGTATTATTGCG 6114
Query 364936 GCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAA 364995
| || ||| | ||||||||||| | ||| | ||| | || || | || ||
Sbjct 6115 GACGGAGGCTCTATTCAGAACATTCCCAACATCCCACAGGATATCAAAGCTCTATATAAG 6174
Query 364996 ACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTT 365055
||||| |||||||| || ||||||| | || | ||||| || ||||| ||||| |||
Sbjct 6175 ACCGTCTGGGAAATATCTCAGCGAACTATAGTTCAGATGGCTGCTGATCGAGGTGCATTT 6234
Query 365056 ATCTGTCAGAGCCAGTCGTTTAACGTATTCA--TGACTCAGCCAACCTCCGCCAAGCTTA 365113
||| || |||||| | || ||| || ||| |||| ||| | ||| |||
Sbjct 6235 ATCGACCAATCCCAGTCTCTCAA--TATCCATTTGAAGGAGCCGACCATGGGCAAAATTA 6292
Query 365114 CATCCATGCATTTCTACGGG-TGGAAATCCGGTCTTAAGACAGG 365156
| |||||||||| ||||| |||||| ||||| || || ||
Sbjct 6293 CCAGCATGCATTTC-ACGGGTTGGAAACTTGGTCTGAAAACCGG 6335
>seq302
Length=30871
Score = 98.7 bits (108), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 3/210 (1%)
Strand=Plus/Minus
Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGAT-GAA--CAATGAACGTTCATTCGCGGAACGT 22494
|| || || |||||||| | |||||| ||| ||| || | | || ||| | |||
Sbjct 11692 AAGAAAGCTGATTGGGCCATCCGATGGATTGAAGACAAGGAGTCTACCTTTGCGCAGCGT 11633
Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554
||| | || || |||| ||||||||||| ||||| ||| | || | |||||||
Sbjct 11632 CTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGATCCTTCGCTTCAATCTTC 11573
Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614
||||| || ||||| | ||||||| ||||| |||||||| || ||| | ||| ||
Sbjct 11572 TGGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTTCTAACGAGCTTATTTCTCGT 11513
Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGT 22644
|| ||||| | || || |||||||| |||
Sbjct 11512 GACGAGGGCTTACACACTGATTTTGCCTGT 11483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303279388675208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |