Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq819 105 6e-18
seq1424 96.9 3e-15
>seq819
Length=4427
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || || | ||| || || || || | ||| |||||||| || || ||||||||| |
Sbjct 1472 CCTCCACGGAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGAC 1413
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| ||||||||||| ||| |||| | ||||| ||||| ||||||
Sbjct 1412 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGGG 1353
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||||| ||| | | || | |||||| ||||| | |
Sbjct 1352 ATACCCTCCTTGTCTTGAATTTTGGACTTAACCGCGTCGATAGTATCACCTGACTCAACG 1293
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|||| || | ||| || |||||
Sbjct 1292 TCGAGTGTGATGGTCTTCCCGGT 1270
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| ||||| | || ||| ||||| | || |||||| ||||||||||| ||
Sbjct 2263 GCCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGA 2204
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| || || || |||||||| || || || |||| | |||||||| || || ||
Sbjct 2203 AAGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGG 2144
Query 131127 GATTCCTTCTTTGTCGGTGATTTT-CTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
||| ||||| ||||| |||||| || || | || || | || || | | |||||
Sbjct 2143 GATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTG-TCAATTGTGTCAGAGCTCTCGA 2085
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | |||||| || || |||||||| ||||| ||||||||
Sbjct 2084 CCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
>seq1424
Length=24560
Score = 96.9 bits (106), Expect = 3e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
||||||| ||||| |||||||| | || || ||||| ||||| ||||| ||| |||
Sbjct 23809 CCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGA 23750
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| || ||||||||||| || ||||| || || || || |||||| ||||| | |
Sbjct 23749 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGT 23690
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || ||| ||||||||| || | || | ||| || || || || || || ||||
Sbjct 23689 CGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 23630
Query 131225 A 131225
|
Sbjct 23629 A 23629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471986579688960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |