Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq134 203 4e-47 >seq134 Length=7744 Score = 203 bits (224), Expect = 4e-47 Identities = 534/815 (66%), Gaps = 0/815 (0%) Strand=Plus/Minus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 || || ||||||||||||||||| |||||||||||| || ||||| | | | | | Sbjct 5083 ACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAAAAGATCACGAGCCCGAACT 5024 Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190 || || ||||| ||||| || || | ||| | | |||||||| ||||||||| Sbjct 5023 TCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGT 4964 Query 63191 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63250 || | || || || | | |||| |||||||| || |||||||| || | |||||||| Sbjct 4963 TCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCCCTGGTCGACATATCTAGCA 4904 Query 63251 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAG 63310 ||||| || |||| | || |||||||| || || || || | ||||| || || | Sbjct 4903 GTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCA 4844 Query 63311 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63370 || || || || ||||||| ||| ||||| || || || || | || Sbjct 4843 ATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACCAATACCACCAGCAGTCTTT 4784 Query 63371 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 63430 || || || || || || ||||| || || || ||||| ||||| || ||| ||||| Sbjct 4783 GAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCAATACTGTCCTCCTTCATG 4724 Query 63431 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 63490 | | || || || || ||| || | | || || ||||| || | ||||||| Sbjct 4723 TCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGA 4664 Query 63491 GAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA 63550 ||||| || || || |||||| ||| | || || || || || || | |||| | Sbjct 4663 GAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGTTTCGATGACCTTCTCTACA 4604 Query 63551 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 63610 || | ||||||||| || || |||||||| | |||||| ||||| | |||| | | Sbjct 4603 TCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTGTTGAGGGCGTTCAGCAACT 4544 Query 63611 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63670 ||| ||| ||| | ||| || || || | ||| || || || || || | || Sbjct 4543 TTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTTGAATCCGAAGTATTGATAA 4484 Query 63671 GAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACA 63730 ||||| || || || | ||| | || || | || |||| || | ||| Sbjct 4483 TTGAAGTCACGATCATAGACAATGGCAGAATTAAATTCATCCGCATGCCGCATCACTGTT 4424 Query 63731 TCCATGGTAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTG 63790 || ||| || || || || | || ||| || || |||| ||| | | Sbjct 4423 TCGTACGTAGCCTGCGATATCATTGGGGCAGGTCGTTGATTCTTCGGGTTGATATAATGG 4364 Query 63791 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACG 63850 | | || || ||||| | |||| ||||||| |||| ||||| ||||| ||||| Sbjct 4363 TAGAGGTCATCTATCACCGAAGAAAATTGTTTTTTAGTTTGCTTGTGGAGATTGGATACA 4304 Query 63851 GCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 63885 ||||| | || ||||| || || || || || || Sbjct 4303 GCTATCCGGGCAGCTAGGATTGCGTAGTCTGGGTG 4269 Score = 98.7 bits (108), Expect = 1e-15 Identities = 193/285 (68%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 61843 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 61902 ||||| || || ||||| ||||| ||||| | | ||||| |||||||||||||| || Sbjct 6390 GTCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGT 6331 Query 61903 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 61962 ||| ||||| || |||| || |||||||| || || | |||| |||| || Sbjct 6330 TTTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTGCCCATGGTCGGCTC 6271 Query 61963 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 62022 | ||||||||| | ||| || ||| ||||| || || || | || |||||||| Sbjct 6270 CTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAGCCAT 6211 Query 62023 TTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTC 62082 | | || || || | |||||||| | || ||||| | || ||||| | Sbjct 6210 CTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATATCCTG 6151 Query 62083 TGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 62124 ||| | ||| | | |||||||| || || || || || ||||| Sbjct 6150 TGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAAT 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633596801742400