Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq819 107 2e-18
>seq819
Length=4427
Score = 107 bits (118), Expect = 2e-18
Identities = 149/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CA 25081
||||| || |||||||| |||| || ||||| ||| |||||||| | | ||| |
Sbjct 1270 ACCGGGAAGACCATCACACTCGACGTTGAGTCAGGTGATACTATCGACGCGGTTAAGTCC 1329
Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141
|||| ||| ||||| || || || || |||||||||||||| |||| || ||||||||
Sbjct 1330 AAAATTCAA-GACAAGGAGGGTATCCCTCCTGACCAACAGCGCCTTATCTTCGCCGGCAA 1388
Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201
|| | || || | ||| || || |||||||||||| || || || || || || ||
Sbjct 1389 GCAGCTTGAGGACGGTCGTACCCTGTCCGATTACAATATCCAGAAGGAGTCTACCCTCCA 1448
Query 25202 TTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || || | || | |||||||
Sbjct 1449 CTTGGTTCTCCGTCTCCGTGGAGGAA 1474
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/202 (69%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 25009 TTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCG 25068
|||| || || | || || || ||||||| | || ||||| || || || || ||||
Sbjct 1590 TTGTGAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAATCTTCAGATACCATCG 1649
Query 25069 AGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTA 25128
| ||||| |||||| || ||||||||||| || || || || || || | |
Sbjct 1650 ACAACGTGAAGAGCAAAATCCAGGATAAAGAAGGGATCCCCCCGGATCAGCAACGTCTGA 1709
Query 25129 TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAG 25188
| || || || || || | ||||||| ||||| || ||||| || || |||||||
Sbjct 1710 TCTTCGCTGGAAAGCAGCTCGAAGATGGCCGCACCTTGTCGGATTATAACATCCAAAAAG 1769
Query 25189 AATCCACGCTACATTTAGTGCT 25210
|||| ||||| ||| | || ||
Sbjct 1770 AATCAACGCTCCATCTTGTCCT 1791
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/207 (70%), Gaps = 8/207 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || |||||||| | ||||| ||| | || || | ||||| || ||
Sbjct 1808 ATGCAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAAAGCTCA 1867
Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || ||||| || | |||||||| || || ||||| || || ||||| ||
Sbjct 1868 GATACCATCGA--CAACGTTAAAAGCAAAA--TCCAAGATAAAGAGGGTATCCCACCAGA 1923
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| || || |||| || || || ||||| | || || | || ||| | ||| ||
Sbjct 1924 CCAGCAACGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTA 1983
Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201
|||||| |||||||||||||| || ||
Sbjct 1984 CAATATCCAAAAAGAATCCACACTTCA 2010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433304530413860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |