Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq819 107 2e-18 >seq819 Length=4427 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CA 25081 ||||| || |||||||| |||| || ||||| ||| |||||||| | | ||| | Sbjct 1270 ACCGGGAAGACCATCACACTCGACGTTGAGTCAGGTGATACTATCGACGCGGTTAAGTCC 1329 Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141 |||| ||| ||||| || || || || |||||||||||||| |||| || |||||||| Sbjct 1330 AAAATTCAA-GACAAGGAGGGTATCCCTCCTGACCAACAGCGCCTTATCTTCGCCGGCAA 1388 Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 || | || || | ||| || || |||||||||||| || || || || || || || Sbjct 1389 GCAGCTTGAGGACGGTCGTACCCTGTCCGATTACAATATCCAGAAGGAGTCTACCCTCCA 1448 Query 25202 TTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || | || | ||||||| Sbjct 1449 CTTGGTTCTCCGTCTCCGTGGAGGAA 1474 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 25009 TTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCG 25068 |||| || || | || || || ||||||| | || ||||| || || || || |||| Sbjct 1590 TTGTGAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAATCTTCAGATACCATCG 1649 Query 25069 AGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTA 25128 | ||||| |||||| || ||||||||||| || || || || || || | | Sbjct 1650 ACAACGTGAAGAGCAAAATCCAGGATAAAGAAGGGATCCCCCCGGATCAGCAACGTCTGA 1709 Query 25129 TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAG 25188 | || || || || || | ||||||| ||||| || ||||| || || ||||||| Sbjct 1710 TCTTCGCTGGAAAGCAGCTCGAAGATGGCCGCACCTTGTCGGATTATAACATCCAAAAAG 1769 Query 25189 AATCCACGCTACATTTAGTGCT 25210 |||| ||||| ||| | || || Sbjct 1770 AATCAACGCTCCATCTTGTCCT 1791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| | ||||| ||| | || || | ||||| || || Sbjct 1808 ATGCAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAAAGCTCA 1867 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| || | |||||||| || || ||||| || || ||||| || Sbjct 1868 GATACCATCGA--CAACGTTAAAAGCAAAA--TCCAAGATAAAGAGGGTATCCCACCAGA 1923 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || |||| || || || ||||| | || || | || ||| | ||| || Sbjct 1924 CCAGCAACGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTA 1983 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 |||||| |||||||||||||| || || Sbjct 1984 CAATATCCAAAAAGAATCCACACTTCA 2010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433304530413860