Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq302 111 2e-19
>seq302
Length=30871
Score = 111 bits (122), Expect = 2e-19
Identities = 198/287 (69%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
||||| || ||||| | || || || | || || || | |||||||| || |||
Sbjct 11809 ATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCTGAGTGAATGTTCTCCATCATGATCTGG 11868
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|| |||||||| || | ||| || | | ||| || || || | ||| || ||
Sbjct 11869 AAGCCGTAGAAGCAACGAGCCTCGGGAACCTGAACCTCCCCGCTGAAACGCTCAACCAGG 11928
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
||||| ||||| || ||||| || || || || || ||||| | || || || |
Sbjct 11929 TTTTCGTTGACAATGCCATCCGACGCGGCGAAGAATGCCAACACGTGTGAGATGAAGTAC 11988
Query 93542 TTCTCATCATCTTT-AAGCT--TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598
||||||||| || || || | | ||||||| ||||||||||| || || | ||||
Sbjct 11989 CGCTCATCATCGTTCAATCTGTTGTTCCAATCGTGAAGATCTTTTGAGAGGTCAATTTCT 12048
Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
|| ||||||| ||||| || |||||||| || ||||| | ||| ||
Sbjct 12049 TCTGCAGTCCAGAACGACGCCTCTGCTTTCTTATACATTTGCCAGAT 12095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556829866382560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |