Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq302 111 2e-19 >seq302 Length=30871 Score = 111 bits (122), Expect = 2e-19 Identities = 198/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || ||||| | || || || | || || || | |||||||| || ||| Sbjct 11809 ATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCTGAGTGAATGTTCTCCATCATGATCTGG 11868 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || |||||||| || | ||| || | | ||| || || || | ||| || || Sbjct 11869 AAGCCGTAGAAGCAACGAGCCTCGGGAACCTGAACCTCCCCGCTGAAACGCTCAACCAGG 11928 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||| ||||| || ||||| || || || || || ||||| | || || || | Sbjct 11929 TTTTCGTTGACAATGCCATCCGACGCGGCGAAGAATGCCAACACGTGTGAGATGAAGTAC 11988 Query 93542 TTCTCATCATCTTT-AAGCT--TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||||||||| || || || | | ||||||| ||||||||||| || || | |||| Sbjct 11989 CGCTCATCATCGTTCAATCTGTTGTTCCAATCGTGAAGATCTTTTGAGAGGTCAATTTCT 12048 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || ||||||| ||||| || |||||||| || ||||| | ||| || Sbjct 12049 TCTGCAGTCCAGAACGACGCCTCTGCTTTCTTATACATTTGCCAGAT 12095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556829866382560