Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq819 140 3e-28 seq1424 102 7e-17 seq1691 93.3 4e-14 seq134 84.2 2e-11 >seq819 Length=4427 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| ||||| | ||||||||||| |||| | | Sbjct 1808 ATGCAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAAAGCTCA 1867 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | ||| ||||| ||||| || |||||||| ||||| || || Sbjct 1868 GATACCATCGACAACGTTAAAAGCAAAATCCAAGATAAAGAGGGTATCCCACCAGACCAG 1927 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| || || || |||||| | ||||| ||| || ||||||| ||||| Sbjct 1928 CAACGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTACAAT 1987 Query 22399 ATTCAAAAAGAATCCAC 22415 || |||||||||||||| Sbjct 1988 ATCCAAAAAGAATCCAC 2004 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || |||||| | || || ||||| |||| || || || || | | | Sbjct 2036 ATGCAGATCTTCGTGAAAACTCTGACTGGCAAAACCATCACACTGGAGGTCGAGAGCTCT 2095 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | ||| ||||| ||||||||||| || || ||||| ||||| Sbjct 2096 GACACAATTGACAACGTAAAAAGCAAAATCCAAGACAAGGAAGGGATCCCACCAGATCAG 2155 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| || |||||| |||| ||| || || | || || |||||| Sbjct 2156 CAGCGACTTATCTTTGCTGGTAAACAGCTAGAAGATGGTCGAACGCTTTCGGACTACAAC 2215 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || ||| | ||||| || ||| ||||||| || || Sbjct 2216 ATTCAGAAGGAGAGCACTCTCCATTTGGTGTTGAGATTGCGGGGTGG 2262 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||||||||||||||||||||| || || || ||||| || ||||| || |||||||| Sbjct 1330 AAAATTCAAGACAAGGAGGGTATCCCTCCTGACCAACAGCGCCTTATCTTCGCCGGCAAG 1389 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| || ||| | ||||||||||| || || || || || ||| | || Sbjct 1390 CAGCTTGAGGACGGTCGTACCCTGTCCGATTACAATATCCAGAAGGAGTCTACCCTCCAC 1449 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || ||| | || | || ||||| Sbjct 1450 TTGGTTCTCCGTCTCCGTGGAGG 1472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 22229 TTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGG 22288 |||| ||||| | || || || || |||| | || |||||| | | |||||| | | Sbjct 1590 TTGTGAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAATCTTCAGATACCATCG 1649 Query 22289 ACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTA 22348 || | | || ||||| || || || || || || || || ||||| |||||||| | Sbjct 1650 ACAACGTGAAGAGCAAAATCCAGGATAAAGAAGGGATCCCCCCGGATCAGCAACGTCTGA 1709 Query 22349 TATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAG 22408 | || || || || ||| | || ||| ||||||| | || ||||| ||||| ||||||| Sbjct 1710 TCTTCGCTGGAAAGCAGCTCGAAGATGGCCGCACCTTGTCGGATTATAACATCCAAAAAG 1769 Query 22409 AATCCAC 22415 |||| || Sbjct 1770 AATCAAC 1776 >seq1424 Length=24560 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || || ||| ||| ||| | ||| || |||| Sbjct 23644 ACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGACACCATCGACAATGTCAAGAGT 23703 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| || || ||||||||||| |||||||| || || || | || || ||||||||| Sbjct 23704 AAAATCCAGGATAAGGAGGGTATCCCACCCGACCAGCAGCGATTGATCTTCGCCGGCAAA 23763 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| | |||||| ||| || | |||||| ||||| ||||| Sbjct 23764 CAGCTTGAGGATGGCCGGACGCTTAGCGATTATAACATCCAAAA 23807 >seq1691 Length=23441 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| ||||| ||||| || ||||| | || || || ||||||||| | || Sbjct 9108 AGACAAGGAGGGCATTCCCCCCGACCAGCAACGCTTGATCTTCGCTGGCAAACAGCTTGA 9049 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 ||| ||| ||| | || || |||||||| ||||| ||||| ||| | || | || | Sbjct 9048 GGACGGCCGTACCCTTTCTGACTACAACATCCAAAAGGAATCGACCCTTCACCTCGTGCT 8989 Query 22431 GCGATTGCGCGGAGGT 22446 ||| |||| || ||| Sbjct 8988 GCGTCTGCGTGGTGGT 8973 >seq134 Length=7744 Score = 84.2 bits (92), Expect = 2e-11 Identities = 200/299 (67%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 130102 AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCC 130161 || || | ||| ||| |||| || | |||||||||||| | |||||| || | || ||| Sbjct 4999 AGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCC 4940 Query 130162 TTCCGT---TTGCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATT 130218 |||| || || || ||||| || | | | | |||||| | || |||| |||| Sbjct 4939 GGCCGTTTATTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATT 4880 Query 130219 GCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCC-CGAAC 130277 | | | |||||| | | || ||||| | ||||| || ||| | ||| |||| Sbjct 4879 GGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCC-GGTGCCACGAAT 4821 Query 130278 GTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTAG 130337 | |||| | | ||||| || || || || ||||| ||||| || ||| | Sbjct 4820 GCGGTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAA 4761 Query 130338 CGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAGGCCA 130396 ||| || ||||| || | |||||||| || || |||| | ||||| ||||| |||| Sbjct 4760 CGTGTCGTAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCA 4702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419705267006860