Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq819 143 5e-29 seq1424 132 9e-26 >seq819 Length=4427 Score = 143 bits (158), Expect = 5e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || ||||| ||||||||||| || || |||||| Sbjct 2034 CCGCCACGAAGGCGAAGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAG 1975 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||| || || ||||| || |||| ||| ||||| ||||| Sbjct 1974 AGAGTTCGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGG 1915 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGC-CTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || || || ||||| || ||||| || ||| |||||||| |||| ||| || Sbjct 1914 ATACCCTCTTTATCTTGGAT-TTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGAC 1856 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | || || ||||| || || |||||||| ||||| |||||||| Sbjct 1855 TTCAAGAGTAATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808 Score = 141 bits (156), Expect = 2e-28 Identities = 152/197 (77%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || ||||| || |||||||||||||||||||| || | || | |||||||| | Sbjct 1787 CAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATCTTCGA 1728 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || ||||| || || | ||| || || || || || ||||| || || || | Sbjct 1727 GCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATCCTGGA 1668 Query 68374 TCTTTGC-CTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 | ||||| ||| ||| |||||||| |||| ||||| || |||||||||||||| || Sbjct 1667 T-TTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGGTCTTG 1609 Query 68433 CCCGTGAGGGTCTTGAC 68449 || |||||||| || || Sbjct 1608 CCAGTGAGGGTTTTCAC 1592 Score = 136 bits (150), Expect = 7e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || || || | |||||||| || || ||||| || ||||| || ||||||| Sbjct 1474 TTCCTCCACGGAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGG 1415 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || || || | |||||| |||||||| || || | |||||||| || | Sbjct 1414 ACAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAG 1355 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || |||||||||||||| || | ||| || || ||||| || || |||| || | Sbjct 1354 GGATACCCTCCTTGTCTTGAATTTTGGACTTAACCGCGTCGATAGTATCACCTGACTCAA 1295 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 | || | |||||||| || || || Sbjct 1294 CGTCGAGTGTGATGGTCTTCCCGGT 1270 Score = 118 bits (130), Expect = 2e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| || || ||| ||| || || ||||| || || || || || | ||||| Sbjct 2248 CAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCATC 2189 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||||| ||| || || || || || |||| || || || ||||| || ||||||||||| Sbjct 2188 TTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTTGTC 2129 Query 68369 TTGAATCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGG 68427 ||| || ||||| || ||| || || ||||| | || || |||| ||||||| Sbjct 2128 TTGGAT-TTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTGATGG 2070 Query 68428 TTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || || || || ||||| |||||||| Sbjct 2069 TTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 >seq1424 Length=24560 Score = 132 bits (146), Expect = 9e-26 Identities = 139/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 |||||||||||||||||| || |||| ||||| || | ||| || |||||||| || Sbjct 23807 TTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATC 23748 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||||||||| || || ||||| || || || || |||||| ||| Sbjct 23747 AATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGTCG 23688 Query 68394 ATGGTGTCTGCTG-ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| |||| | || || || | |||||||| || |||||||||||||||||||| Sbjct 23687 ATGGTGTC-GCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 23629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921571203875680