Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq819 145 2e-29 seq1424 109 1e-18 seq302 86.0 1e-11 >seq819 Length=4427 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || |||| ||| ||||||||||||||| ||||||| | Sbjct 2034 CCGCCACGAAGGCGAAGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAG 1975 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | ||||||||||||||||| || || || || |||| Sbjct 1974 AGAGTTCGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGG 1915 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || |||||||| |||||||| ||| ||||| || || | ||| ||| ||| Sbjct 1914 ATACCCTCTTTATCTTGGATTTTGCTTTTAACGTTGTCGATGGTATCTGAGCT---TTCG 1858 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || || ||||| || ||||| ||||| |||||||| Sbjct 1857 ACTTCAAGAGTAATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808 Score = 134 bits (148), Expect = 3e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || ||||| | ||| |||||||||||| ||||| || | Sbjct 1806 CCACCACGGAGACGAAGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGAC 1747 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | || ||||| |||||||||||||| || ||| ||| Sbjct 1746 AAGGTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGG 1687 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||||||||||||||| ||| |||||||| || || | ||| ||||| || Sbjct 1686 ATCCCTTCTTTATCCTGGATTTT-GCTCTTCACGTTGTCGATGGTATCTGAAGATTCCAC 1628 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || | ||||| ||||| || || || || || || Sbjct 1627 CTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 1592 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || |||| || || || ||||| || | || || || |||||| Sbjct 1436 TCCTTCTGGATATTGTAATCGGACAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAG 1377 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || |||||||| | ||||| || || || || || ||||| | || || Sbjct 1376 ATAAGGCGCTGTTGGTCAGGAGGGATACCCTCCTTGTCTTGAATTTTGGACTTAACCGCG 1317 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 || |||| ||| | || || || ||||| ||||| ||||||||||| Sbjct 1316 TCGATAGTATCACCTGACTCAACGTCGAGTGTGATGGTCTTCCCGGT 1270 >seq1424 Length=24560 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 |||| | | |||||||| ||||| ||| ||||| || || || || | ||||| || Sbjct 23816 GTGCGTACCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCG 23757 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 |||||||||| ||||| || |||||| || || |||||||||||||| || Sbjct 23756 GCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTG 23697 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || || | ||||| || || || || || ||||| ||||| || || || ||| Sbjct 23696 ACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 23637 Query 288457 TTGACGAA 288464 |||||||| Sbjct 23636 TTGACGAA 23629 >seq302 Length=30871 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||| ||||| ||| | |||||| ||||| || || ||||| |||||||| || || Sbjct 11367 TCGGAATGAACGCCAAGCTCATGTGCCAATACATTGAGTTCGTCGCTGATCGCCTCCTCG 11308 Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAA 269272 || | || | ||||||| ||||| || | || || || | ||| ||||| | Sbjct 11307 TTGCTTTGGGCAACAAGAAAGTCTACAACTCCACCAACCCATTTGACTTCATGGATAACA 11248 Query 269273 TTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCT 269331 | || || | ||| || || |||||||||||||| ||||| | ||||| || | | || Sbjct 11247 TCTCCCTGGCAGGTAAAACCAACTTCTTCGAAAAACGTGTTGGTGACTACCAGAAGGCC- 11189 Query 269332 GGTGTAATG 269340 ||||| ||| Sbjct 11188 GGTGTCATG 11180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179587231953032