Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq819 145 2e-29
seq1424 109 1e-18
seq302 86.0 1e-11
>seq819
Length=4427
Score = 145 bits (160), Expect = 2e-29
Identities = 171/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || || || | ||| || || |||| ||| ||||||||||||||| ||||||| |
Sbjct 2034 CCGCCACGAAGGCGAAGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAG 1975
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || ||||| || | ||||||||||||||||| || || || || ||||
Sbjct 1974 AGAGTTCGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGG 1915
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423
|| || |||||||| |||||||| ||| ||||| || || | ||| ||| |||
Sbjct 1914 ATACCCTCTTTATCTTGGATTTTGCTTTTAACGTTGTCGATGGTATCTGAGCT---TTCG 1858
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || || || || || ||||| || ||||| ||||| ||||||||
Sbjct 1857 ACTTCAAGAGTAATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808
Score = 134 bits (148), Expect = 3e-26
Identities = 161/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || ||||| | ||| |||||||||||| ||||| || |
Sbjct 1806 CCACCACGGAGACGAAGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGAC 1747
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || ||||| | || ||||| |||||||||||||| || ||| |||
Sbjct 1746 AAGGTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGG 1687
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| |||||||||||||||||||| ||| |||||||| || || | ||| ||||| ||
Sbjct 1686 ATCCCTTCTTTATCCTGGATTTT-GCTCTTCACGTTGTCGATGGTATCTGAAGATTCCAC 1628
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| | ||||| ||||| || || || || || ||
Sbjct 1627 CTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 1592
Score = 86.0 bits (94), Expect = 1e-11
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || |||||||| || |||| || || || ||||| || | || || || ||||||
Sbjct 1436 TCCTTCTGGATATTGTAATCGGACAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAG 1377
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || |||||||| | ||||| || || || || || ||||| | || ||
Sbjct 1376 ATAAGGCGCTGTTGGTCAGGAGGGATACCCTCCTTGTCTTGAATTTTGGACTTAACCGCG 1317
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449
|| |||| ||| | || || || ||||| ||||| |||||||||||
Sbjct 1316 TCGATAGTATCACCTGACTCAACGTCGAGTGTGATGGTCTTCCCGGT 1270
>seq1424
Length=24560
Score = 109 bits (120), Expect = 1e-18
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336
|||| | | |||||||| ||||| ||| ||||| || || || || | ||||| ||
Sbjct 23816 GTGCGTACCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCG 23757
Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396
|||||||||| ||||| || |||||| || || |||||||||||||| ||
Sbjct 23756 GCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTG 23697
Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456
|| || || || | ||||| || || || || || ||||| ||||| || || || |||
Sbjct 23696 ACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 23637
Query 288457 TTGACGAA 288464
||||||||
Sbjct 23636 TTGACGAA 23629
>seq302
Length=30871
Score = 86.0 bits (94), Expect = 1e-11
Identities = 134/189 (71%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212
|||| ||||| ||| | |||||| ||||| || || ||||| |||||||| || ||
Sbjct 11367 TCGGAATGAACGCCAAGCTCATGTGCCAATACATTGAGTTCGTCGCTGATCGCCTCCTCG 11308
Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAA 269272
|| | || | ||||||| ||||| || | || || || | ||| ||||| |
Sbjct 11307 TTGCTTTGGGCAACAAGAAAGTCTACAACTCCACCAACCCATTTGACTTCATGGATAACA 11248
Query 269273 TTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCT 269331
| || || | ||| || || |||||||||||||| ||||| | ||||| || | | ||
Sbjct 11247 TCTCCCTGGCAGGTAAAACCAACTTCTTCGAAAAACGTGTTGGTGACTACCAGAAGGCC- 11189
Query 269332 GGTGTAATG 269340
||||| |||
Sbjct 11188 GGTGTCATG 11180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179587231953032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |