Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq302 111 3e-19 >seq302 Length=30871 Score = 111 bits (122), Expect = 3e-19 Identities = 178/253 (70%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| ||||| || | ||| |||| ||| | | || || | ||| | | Sbjct 11431 ATCATCACTGAAGCTGTCACTATCGAGCAGGAGTTCCTCTCAGATGCGCTCCCAGTCGCG 11372 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||| | || |||||| | | |||||| | || ||||| || ||||| || || ||| | Sbjct 11371 CTTCTCGGAATGAACGCCAAGCTCATGTGCCAATACATTGAGTTCGTCGCTGATCGCCTC 11312 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || | || | || | ||||||| |||||||||| ||||| |||| ||| ||||| Sbjct 11311 CTCGTTGCTTTGGGCAACAAGAAAGTCTACAACTCCACCAACCCATTTGACTTCATGGAT 11252 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACG 243740 ||| || || ||| ||||| |||||||||||||| ||||| |||| || || | | Sbjct 11251 AACATCTCCCTGGCAGGTAAAACCAACTTCTTCGAAAAACGTGTTGGTGACTACCAGAAG 11192 Query 243741 CCCTGGTGTGATG 243753 || ||||| ||| Sbjct 11191 GCC-GGTGTCATG 11180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102817203391400