Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq134 140 4e-28
seq302 114 2e-20
>seq134
Length=7744
Score = 140 bits (154), Expect = 4e-28
Identities = 409/628 (65%), Gaps = 4/628 (1%)
Strand=Plus/Minus
Query 114698 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 114757
|||||| ||| || || |||||||| |||| | | || | | ||||| || | |
Sbjct 5179 TACTTTTCGTAAAGAGCCTCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCA 5120
Query 114758 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGG 114817
| ||||| ||||||| ||||| ||| | ||||||||||||||| ||||| || ||
Sbjct 5119 TTGGGGCAAAAGAGAGTCCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGT 5060
Query 114818 ATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 114877
|||| |||||| ||| ||||| ||| ||| ||||||| | || || || |||
Sbjct 5059 GTCCAAAGAGCTAGGAAAAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGG 5000
Query 114878 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 114937
| ||||| || || | ||||| | |||||||||||| || || | |||| | |||
Sbjct 4999 AGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCC 4940
Query 114938 TTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATT 114994
|| | ||| |||||| ||||| || || ||| || || ||||| ||||||
Sbjct 4939 GGCCGTTTATTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATT 4880
Query 114995 GGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACA 115054
|||| ||| || | || |||||||| || ||| ||| || | | |
Sbjct 4879 GGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATG 4820
Query 115055 TCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGA 115114
|| |||| | ||||||||| || || |||||| || || || | | |
Sbjct 4819 CGGTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAAC 4760
Query 115115 CTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATT 115174
|| |||| || || || || ||| |||| | ||||||||||||| | |||
Sbjct 4759 GTGTCGTAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATC 4700
Query 115175 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG 115234
|| || || ||||| || ||||| ||||| || | || || |||| | |||
Sbjct 4699 TGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGA 4640
Query 115235 GACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAG 115294
||||| | ||||| || | ||| | || || || ||||| |||| |
Sbjct 4639 GACATGAGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCA 4580
Query 115295 ACCCGCATAAACATGTATTG-GGGTGTT 115321
|| ||||| | ||||| ||| ||| |||
Sbjct 4579 ACACGCATGATCATGTGTTGAGGGCGTT 4552
>seq302
Length=30871
Score = 114 bits (126), Expect = 2e-20
Identities = 303/455 (67%), Gaps = 12/455 (3%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
|||||| ||||| || || ||||||||||| || || || ||| | ||| || |||||
Sbjct 11198 GTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTATCCAT 11257
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875
|| ||||||||||| | ||||| | | || ||| ||| || | ||||||
Sbjct 11258 GAAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGC--AACGAGGAGG 11315
Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTT 125934
||||| | |||| |||||||||| | |||| || | |||||| |||| || |
Sbjct 11316 CGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGCGCG 11375
Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994
|| ||||||||| || ||| |||| ||| ||| || || ||||| | |||
Sbjct 11376 AC-TGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATCCT 11434
Query 125995 GTGAATGGTGTCCACCCCAGGTCTATTGCGCAA---AGTCTTGAAGAGTTCCACGGCAAA 126051
| | | || | ||| | | ||||| || || ||| || ||||||
Sbjct 11435 CTCGACAGCCTCTTGGCTAGGACGGTGACGCAAGTGAGAAAAGAGGAG--ACA-GGCAAA 11491
Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111
|| ||| | ||||||||||| || || || || || || || || || |||||
Sbjct 11492 ATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGACCAGGCAT 11551
Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171
||||| || ||||||| |||||| || | | || || || ||||||||| || ||
Sbjct 11552 AAGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAAGATGCCTTC 11611
Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206
||| ||||| || | ||||||| |||||||
Sbjct 11612 AACAGCAGCGAAGGCGACAAGACGCTGCGCAAAGG 11646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597320417007520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |