Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq134 140 4e-28 seq302 114 2e-20 >seq134 Length=7744 Score = 140 bits (154), Expect = 4e-28 Identities = 409/628 (65%), Gaps = 4/628 (1%) Strand=Plus/Minus Query 114698 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 114757 |||||| ||| || || |||||||| |||| | | || | | ||||| || | | Sbjct 5179 TACTTTTCGTAAAGAGCCTCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCA 5120 Query 114758 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGG 114817 | ||||| ||||||| ||||| ||| | ||||||||||||||| ||||| || || Sbjct 5119 TTGGGGCAAAAGAGAGTCCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGT 5060 Query 114818 ATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 114877 |||| |||||| ||| ||||| ||| ||| ||||||| | || || || ||| Sbjct 5059 GTCCAAAGAGCTAGGAAAAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGG 5000 Query 114878 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 114937 | ||||| || || | ||||| | |||||||||||| || || | |||| | ||| Sbjct 4999 AGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCC 4940 Query 114938 TTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATT 114994 || | ||| |||||| ||||| || || ||| || || ||||| |||||| Sbjct 4939 GGCCGTTTATTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATT 4880 Query 114995 GGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACA 115054 |||| ||| || | || |||||||| || ||| ||| || | | | Sbjct 4879 GGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATG 4820 Query 115055 TCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGA 115114 || |||| | ||||||||| || || |||||| || || || | | | Sbjct 4819 CGGTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAAC 4760 Query 115115 CTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATT 115174 || |||| || || || || ||| |||| | ||||||||||||| | ||| Sbjct 4759 GTGTCGTAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATC 4700 Query 115175 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG 115234 || || || ||||| || ||||| ||||| || | || || |||| | ||| Sbjct 4699 TGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGA 4640 Query 115235 GACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAG 115294 ||||| | ||||| || | ||| | || || || ||||| |||| | Sbjct 4639 GACATGAGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCA 4580 Query 115295 ACCCGCATAAACATGTATTG-GGGTGTT 115321 || ||||| | ||||| ||| ||| ||| Sbjct 4579 ACACGCATGATCATGTGTTGAGGGCGTT 4552 >seq302 Length=30871 Score = 114 bits (126), Expect = 2e-20 Identities = 303/455 (67%), Gaps = 12/455 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| ||||| || || ||||||||||| || || || ||| | ||| || ||||| Sbjct 11198 GTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTATCCAT 11257 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 || ||||||||||| | ||||| | | || ||| ||| || | |||||| Sbjct 11258 GAAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGC--AACGAGGAGG 11315 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTT 125934 ||||| | |||| |||||||||| | |||| || | |||||| |||| || | Sbjct 11316 CGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGCGCG 11375 Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 || ||||||||| || ||| |||| ||| ||| || || ||||| | ||| Sbjct 11376 AC-TGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATCCT 11434 Query 125995 GTGAATGGTGTCCACCCCAGGTCTATTGCGCAA---AGTCTTGAAGAGTTCCACGGCAAA 126051 | | | || | ||| | | ||||| || || ||| || |||||| Sbjct 11435 CTCGACAGCCTCTTGGCTAGGACGGTGACGCAAGTGAGAAAAGAGGAG--ACA-GGCAAA 11491 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| | ||||||||||| || || || || || || || || || ||||| Sbjct 11492 ATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGACCAGGCAT 11551 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 ||||| || ||||||| |||||| || | | || || || ||||||||| || || Sbjct 11552 AAGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAAGATGCCTTC 11611 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 ||| ||||| || | ||||||| ||||||| Sbjct 11612 AACAGCAGCGAAGGCGACAAGACGCTGCGCAAAGG 11646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597320417007520