Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq819 104 2e-17
seq1691 87.8 2e-12
>seq819
Length=4427
Score = 104 bits (114), Expect = 2e-17
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| || | | ||| || || |||| || ||||||||||| || ||||| || |
Sbjct 2035 ACCGCCACGAAGGCGAAGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGA 1976
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| || || |||| |||||||| || || || | || || || |||||||| || ||
Sbjct 1975 GAGAGTTCGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGG 1916
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT--ACAACCTCCACTGTATCACCGGCGTCC 64393
|| || ||||| ||||| | ||||||||| || || | ||||| | ||
Sbjct 1915 GATACCCTCTTTATCTTGGA--TTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCG 1858
Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| | ||| | || |||||||| | || |||||||| || |||||
Sbjct 1857 ACTTCAAGAGTAATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808
Score = 96.9 bits (106), Expect = 3e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || || |||||||| | | ||| || |||| |||||||||||||||
Sbjct 1442 GTAGACTCCTTCTGGATATTGTAATCGGACAGGGTACGACCGTCCTCAAGCTGCTTGCCG 1383
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || || ||||| ||||| ||||| || || || || ||||| ||||| |||
Sbjct 1382 GCGAAGATAAGGCGCTGTTGGTCAGGAGGGATACCCTCCTTGTCTTGAATTTTGGACTTA 1323
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
|| | || | |||||||| | || || || | || | |||||| |||||
Sbjct 1322 ACCGCGTCGATAGTATCACCTGACTCAACGTCGAGTGTGATGGTCTTCCCGGT 1270
Score = 96.9 bits (106), Expect = 3e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||| | ||| ||||||||||| ||||| ||||| | | |||||| | ||
Sbjct 1792 AAGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATC 1733
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| |||||||| || || | || || || ||||| || || || || |||||||| ||
Sbjct 1732 TTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATC 1673
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| ||||| ||| || || | ||||| | ||||| || | || | |||
Sbjct 1672 CTGGATTTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGGT 1613
Query 64411 CTTGCCGGTCAAAGTTTTTAC 64431
|||||| || | ||||| ||
Sbjct 1612 CTTGCCAGTGAGGGTTTTCAC 1592
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || |||||||| | ||| | ||| | || || || ||||||||||| || |
Sbjct 2262 CCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 2203
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | ||||| ||||| || || ||| | || || |||||||| || || ||
Sbjct 2202 AGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGG 2143
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| ||||| || ||||| ||||| ||||| || | ||| ||| | || ||
Sbjct 2142 ATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACC 2083
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||| ||||| |||| |||||| ||||| || |||||
Sbjct 2082 TCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
>seq1691
Length=23441
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | ||||| || |||| |||||||| ||||| |||||||| || |
Sbjct 8973 ACCACCACGCAGACGCAGCACGAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGA 9032
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||| || |||| |||||||| ||||| || | || | || ||||||||||| ||
Sbjct 9033 AAGGGTACGGCCGTCCTCAAGCTGTTTGCCAGCGAAGATCAAGCGTTGCTGGTCGGGGGG 9092
Query 64336 AATTCCTTCTTTTTCT 64351
||| || || || |||
Sbjct 9093 AATGCCCTCCTTGTCT 9108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499617044731360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |