Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq134 150 2e-31 >seq134 Length=7744 Score = 150 bits (166), Expect = 2e-31 Identities = 311/460 (68%), Gaps = 2/460 (0%) Strand=Plus/Plus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GAC 93956 || ||||| ||||| || || |||||| || |||||| ||||||| ||||| || ||| Sbjct 4665 CCTACCCTTTTCAATGCCGGTACCCCGCAACCTCAGATGGCTTCGTGCTTCCTTATCGAC 4724 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | |||| ||| || || |||| ||||| | ||| ||||| || || Sbjct 4725 -ATGAAGGAGGACAGTATTGAGGGTATTTACGACACGTTGAAGACTTGTGCCTTGATTTC 4783 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACAT 94076 ||| || || || || || ||| | ||| | | |||| || || || ||||| Sbjct 4784 AAAGACTGCTGGTGGTATTGGTCTCAACATTCACCGCATTCGTGGCACCGGCTCTTACAT 4843 Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 ||| || ||||| |||| ||||| |||| || ||||| || || ||||||||| | Sbjct 4844 TGCCGGAACAAATGGATCCTCAAACGGAATCGTTCCAATGCTGCGCGTTTTCAACAACAC 4903 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196 || | || || |||||||| ||| | || ||| ||||||| | |||||||| Sbjct 4904 TGCTAGATATGTCGACCAGGGAGGTAATAAACGGCCGGGAGCTTTCGCTATTTATCTCGA 4963 Query 94197 GCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCT 94256 || |||||| | || | | ||| | ||||| || ||||||||||| || || Sbjct 4964 ACCGTGGCACACTGATATTTTCGAATTCTTGGACCTCCGTAAGAACCACGGAAAGGAAGA 5023 Query 94257 GGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGT 94316 | |||| | || || ||| ||||| ||| || || || |||||||| || || Sbjct 5024 AGTTCGGGCTCGTGATCTTTTCCTAGCTCTTTGGACACCTGATCTCTTTATGAAGCGTGT 5083 Query 94317 CGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAA 94356 |||||||| || |||| ||| ||||| ||||||||| Sbjct 5084 TGAGAAAAATGGCGAATGGACTCTCTTTTGCCCCAATGAA 5123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494695718126240