Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq819 107 1e-18 >seq819 Length=4427 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| |||||||| || || ||||| || || || || || |||||||| || Sbjct 2263 GCCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGA 2204 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || ||| | ||||||| ||||| ||||| | || | ||||| || || ||| Sbjct 2203 AAGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGG 2144 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| |||||||||||||| | || || || || | || || Sbjct 2143 GATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGAC 2084 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || |||||||| || ||||||||||| || || || |||||| Sbjct 2083 CTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCATA 2035 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || |||||||| || ||||| ||| |||| ||| |||| || | ||| Sbjct 2010 TGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCAAGCTGT 1951 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || | || || ||||| ||| || || || || || |||||| Sbjct 1950 TTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCTTGGATTTTG 1891 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||||| || | || || ||||| |||| || || | ||||| ||||| || || Sbjct 1890 CTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATAGTTTTGCCGGTA 1831 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || |||||| Sbjct 1830 AGGGTCTTTACGAAGATCTGCATA 1807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357372643202540