Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq819 120 3e-22
seq1424 87.8 2e-12
>seq819
Length=4427
Score = 120 bits (132), Expect = 3e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || ||||| ||||||||||| || ||| || ||| || ||
Sbjct 2016 ACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCA 1957
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| |||||||||||| | || | |||||||||||| || || || || |||||||||||
Sbjct 1956 AGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCTTGG 1897
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
| |||| ||| | || | || | ||| || || |||||||| ||||||| |||||
Sbjct 1896 A-TTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATAGTTTT 1838
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||| || || ||||| || || |||||
Sbjct 1837 GCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808
Score = 98.7 bits (108), Expect = 9e-16
Identities = 156/221 (71%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | || ||||| ||||||||||| |||||||| ||||||||
Sbjct 1809 ATACCACCACGGAGACGAAGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCC 1750
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| || | || ||||| ||| | |||| |||||||| |||||
Sbjct 1749 GACAAGGTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGG 1690
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || ||||||||||| || ||||| || | || | || | ||| || ||||| ||
Sbjct 1689 GGGATCCCTTCTTTATCCTGGATTTTGCTCTTCA-CGTTGTCGATGGTATCTGAAGATTC 1631
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330
|| || | || | || ||||| || || ||||| ||||
Sbjct 1630 CACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTCACAA 1590
>seq1424
Length=24560
Score = 87.8 bits (96), Expect = 2e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 45151 CCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATA 45210
|||||||||| ||||||||||| | || ||| || | ||||| || ||| | |
Sbjct 23809 CCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGA 23750
Query 45211 TCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTT 45270
||||||| |||||||| || || || || || ||||| || ||||| |||| |
Sbjct 23749 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGT 23690
Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330
| | ||||||| |||||||| || ||||| | || ||||| || || || || || |
Sbjct 23689 CGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 23630
Query 45331 A 45331
|
Sbjct 23629 A 23629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451978091222240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |