Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq819 120 3e-22 seq1424 87.8 2e-12 >seq819 Length=4427 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || ||||| ||||||||||| || ||| || ||| || || Sbjct 2016 ACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCA 1957 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||||||||| | || | |||||||||||| || || || || ||||||||||| Sbjct 1956 AGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCTTGG 1897 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 | |||| ||| | || | || | ||| || || |||||||| ||||||| ||||| Sbjct 1896 A-TTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATAGTTTT 1838 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || ||||| || || ||||| Sbjct 1837 GCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808 Score = 98.7 bits (108), Expect = 9e-16 Identities = 156/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| ||||||||||| |||||||| |||||||| Sbjct 1809 ATACCACCACGGAGACGAAGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCC 1750 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || ||||| ||| | |||| |||||||| ||||| Sbjct 1749 GACAAGGTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGG 1690 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||||||||| || ||||| || | || | || | ||| || ||||| || Sbjct 1689 GGGATCCCTTCTTTATCCTGGATTTTGCTCTTCA-CGTTGTCGATGGTATCTGAAGATTC 1631 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 || || | || | || ||||| || || ||||| |||| Sbjct 1630 CACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTCACAA 1590 >seq1424 Length=24560 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 45151 CCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATA 45210 |||||||||| ||||||||||| | || ||| || | ||||| || ||| | | Sbjct 23809 CCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGA 23750 Query 45211 TCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTT 45270 ||||||| |||||||| || || || || || ||||| || ||||| |||| | Sbjct 23749 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGT 23690 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | ||||||| |||||||| || ||||| | || ||||| || || || || || | Sbjct 23689 CGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 23630 Query 45331 A 45331 | Sbjct 23629 A 23629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451978091222240